FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7977, 305 aa 1>>>pF1KB7977 305 - 305 aa - 305 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0575+/-0.000881; mu= 9.1035+/- 0.053 mean_var=138.9877+/-28.984, 0's: 0 Z-trim(111.0): 168 B-trim: 1236 in 3/48 Lambda= 0.108789 statistics sampled from 11839 (12029) to 11839 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.37), width: 16 Scan time: 2.620 The best scores are: opt bits E(32554) CCDS31736.1 NANOG gene_id:79923|Hs108|chr12 ( 305) 2130 345.3 3.4e-95 CCDS73436.1 NANOG gene_id:79923|Hs108|chr12 ( 289) 1266 209.7 2.2e-54 >>CCDS31736.1 NANOG gene_id:79923|Hs108|chr12 (305 aa) initn: 2130 init1: 2130 opt: 2130 Z-score: 1822.5 bits: 345.3 E(32554): 3.4e-95 Smith-Waterman score: 2130; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305) 10 20 30 40 50 60 pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM 250 260 270 280 290 300 pF1KB7 QPEDV ::::: CCDS31 QPEDV >>CCDS73436.1 NANOG gene_id:79923|Hs108|chr12 (289 aa) initn: 1457 init1: 1136 opt: 1266 Z-score: 1090.0 bits: 209.7 E(32554): 2.2e-54 Smith-Waterman score: 1981; 94.8% identity (94.8% similar) in 305 aa overlap (1-305:1-289) 10 20 30 40 50 60 pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS ::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQ------------- 130 140 150 160 190 200 210 220 230 240 pF1KB7 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 ---GCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF 170 180 190 200 210 220 250 260 270 280 290 300 pF1KB7 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM 230 240 250 260 270 280 pF1KB7 QPEDV ::::: CCDS73 QPEDV 305 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:53:58 2016 done: Sun Nov 6 19:53:58 2016 Total Scan time: 2.620 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]