(Linear) (Six-base) MAPSORT of: KIAA0564.seq Check: 9314 from: 1 to: 5715 KIAA0564.orf With 182 enzymes: SgfI * September 16, 2010 13:22 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 72 2396 5715 Size: 72 2324 3319 Fragments arranged by size: 3319 2324 72 AccI GT'mk_AC Cuts at: 0 4429 4444 5715 Size: 4429 15 1271 Fragments arranged by size: 4429 1271 15 Acc65I G'GTAC_C Cuts at: 0 2749 5715 Size: 2749 2966 AclI AA'CG_TT Cuts at: 0 3136 5715 Size: 3136 2579 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1710 2176 2437 2839 2996 3314 5386 5596 Size: 1710 466 261 402 157 318 2072 210 Cuts at: 5596 5715 Size: 119 Fragments arranged by size: 2072 1710 466 402 318 261 210 157 119 AfeI AGC'GCT Cuts at: 0 1081 5715 Size: 1081 4634 AflII C'TTAA_G Cuts at: 0 823 5715 Size: 823 4892 AflIII A'CryG_T Cuts at: 0 2569 5411 5715 Size: 2569 2842 304 Fragments arranged by size: 2842 2569 304 AhdI GACnn_n'nnGTC Cuts at: 0 2978 3158 5715 Size: 2978 180 2557 Fragments arranged by size: 2978 2557 180 AleI CACnn'nnGTG Cuts at: 0 1776 5715 Size: 1776 3939 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 85 5715 Size: 85 5630 AlwNI CAG_nnn'CTG Cuts at: 0 1782 4936 5715 Size: 1782 3154 779 Fragments arranged by size: 3154 1782 779 ApaI G_GGCC'C Cuts at: 0 3603 5715 Size: 3603 2112 ApaLI G'TGCA_C Cuts at: 0 2210 4951 5715 Size: 2210 2741 764 Fragments arranged by size: 2741 2210 764 ApoI r'AATT_y Cuts at: 0 203 702 1792 1991 2637 2965 3697 4001 Size: 203 499 1090 199 646 328 732 304 Cuts at: 4001 4073 5360 5715 Size: 72 1287 355 Fragments arranged by size: 1287 1090 732 646 499 355 328 304 203 199 72 AseI AT'TA_AT Cuts at: 0 3332 5715 Size: 3332 2383 AvaI C'yCGr_G Cuts at: 0 22 147 2402 2809 5715 Size: 22 125 2255 407 2906 Fragments arranged by size: 2906 2255 407 125 22 AvrII C'CTAG_G Cuts at: 0 2730 5715 Size: 2730 2985 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 2420 2453 3235 3268 5715 Size: 2420 33 782 33 2447 Fragments arranged by size: 2447 2420 782 33 33 BamHI G'GATC_C Cuts at: 0 1938 5715 Size: 1938 3777 BanI G'GyrC_C Cuts at: 0 27 1212 2749 3494 3513 5715 Size: 27 1185 1537 745 19 2202 Fragments arranged by size: 2202 1537 1185 745 27 19 BanII G_rGCy'C Cuts at: 0 2810 2849 3603 5715 Size: 2810 39 754 2112 Fragments arranged by size: 2810 2112 754 39 BbsI GAAGACnn'nnnn_ Cuts at: 0 1646 2495 2628 5374 5715 Size: 1646 849 133 2746 341 Fragments arranged by size: 2746 1646 849 341 133 BbvCI CC'TCA_GC Cuts at: 0 2884 5715 Size: 2884 2831 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 382 416 5715 Size: 382 34 5299 Fragments arranged by size: 5299 382 34 BciVI GTATCCnnnnn_n' Cuts at: 0 198 1387 2024 2421 3065 3263 5646 5715 Size: 198 1189 637 397 644 198 2383 69 Fragments arranged by size: 2383 1189 644 637 397 198 198 69 BclI T'GATC_A Cuts at: 0 477 4011 5595 5715 Size: 477 3534 1584 120 Fragments arranged by size: 3534 1584 477 120 BfrBI ATG'CAT Cuts at: 0 5376 5715 Size: 5376 339 BglI GCCn_nnn'nGGC Cuts at: 0 44 4745 5715 Size: 44 4701 970 Fragments arranged by size: 4701 970 44 BglII A'GATC_T Cuts at: 0 4122 5684 5715 Size: 4122 1562 31 Fragments arranged by size: 4122 1562 31 BlpI GC'TnA_GC Cuts at: 0 626 1606 5715 Size: 626 980 4109 Fragments arranged by size: 4109 980 626 Bme1580I G_kGCm'C Cuts at: 0 30 1567 2214 3603 4955 5715 Size: 30 1537 647 1389 1352 760 Fragments arranged by size: 1537 1389 1352 760 647 30 BmrI ACTGGGnnnn_n' Cuts at: 0 2066 3440 4130 5715 Size: 2066 1374 690 1585 Fragments arranged by size: 2066 1585 1374 690 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 2970 5048 5087 5122 5312 5715 Size: 2970 2078 39 35 190 403 Fragments arranged by size: 2970 2078 403 190 39 35 Bpu10I CC'TnA_GC Cuts at: 0 2843 2884 5715 Size: 2843 41 2831 Fragments arranged by size: 2843 2831 41 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 3790 5224 5505 5540 5715 Size: 3790 1434 281 35 175 Fragments arranged by size: 3790 1434 281 175 35 BsaI GGTCTCn'nnnn_ Cuts at: 0 2986 4152 4800 5543 5715 Size: 2986 1166 648 743 172 Fragments arranged by size: 2986 1166 743 648 172 BsaAI yAC'GTr Cuts at: 0 2570 4689 5715 Size: 2570 2119 1026 Fragments arranged by size: 2570 2119 1026 BsaBI GATnn'nnATC Cuts at: 0 994 3076 4265 4413 4615 5495 5715 Size: 994 2082 1189 148 202 880 220 Fragments arranged by size: 2082 1189 994 880 220 202 148 BsaWI w'CCGG_w Cuts at: 0 1181 5715 Size: 1181 4534 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 836 866 5209 5239 5715 Size: 836 30 4343 30 476 Fragments arranged by size: 4343 836 476 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 10 1678 2901 3955 4325 5272 5715 Size: 10 1668 1223 1054 370 947 443 Fragments arranged by size: 1668 1223 1054 947 443 370 10 BseYI C'CCAG_C Cuts at: 0 1782 3519 3949 5715 Size: 1782 1737 430 1766 Fragments arranged by size: 1782 1766 1737 430 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 109 476 506 515 3121 3872 5715 Size: 109 367 30 9 2606 751 1843 Fragments arranged by size: 2606 1843 751 367 109 30 9 BsiEI CG_ry'CG Cuts at: 0 121 5715 Size: 121 5594 BsiHKAI G_wGCw'C Cuts at: 0 2214 2810 4955 5715 Size: 2214 596 2145 760 Fragments arranged by size: 2214 2145 760 596 BsmI GAATG_Cn' Cuts at: 0 1512 1544 1563 4864 5715 Size: 1512 32 19 3301 851 Fragments arranged by size: 3301 1512 851 32 19 BsmBI CGTCTCn'nnnn_ Cuts at: 0 3616 5715 Size: 3616 2099 Bsp1286I G_dGCh'C Cuts at: 0 30 1567 2214 2810 2849 3603 4955 5715 Size: 30 1537 647 596 39 754 1352 760 Fragments arranged by size: 1537 1352 760 754 647 596 39 30 BspEI T'CCGG_A Cuts at: 0 1181 5715 Size: 1181 4534 BspHI T'CATG_A Cuts at: 0 1044 5715 Size: 1044 4671 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 72 2396 5715 Size: 72 2324 3319 Fragments arranged by size: 3319 2324 72 BsrDI GCAATG_nn' Cuts at: 0 398 1733 2742 3347 5715 Size: 398 1335 1009 605 2368 Fragments arranged by size: 2368 1335 1009 605 398 BsrFI r'CCGG_y Cuts at: 0 142 4763 5198 5715 Size: 142 4621 435 517 Fragments arranged by size: 4621 517 435 142 BstAPI GCAn_nnn'nTGC Cuts at: 0 87 493 2641 5715 Size: 87 406 2148 3074 Fragments arranged by size: 3074 2148 406 87 BstBI TT'CG_AA Cuts at: 0 2997 5715 Size: 2997 2718 BstEII G'GTnAC_C Cuts at: 0 1200 5715 Size: 1200 4515 BstYI r'GATC_y Cuts at: 0 297 449 1699 1938 3277 4122 4886 5684 Size: 297 152 1250 239 1339 845 764 798 Cuts at: 5684 5715 Size: 31 Fragments arranged by size: 1339 1250 845 798 764 297 239 152 31 BstZ17I GTA'TAC Cuts at: 0 4430 5715 Size: 4430 1285 Bsu36I CC'TnA_GG Cuts at: 0 1389 1883 2754 5715 Size: 1389 494 871 2961 Fragments arranged by size: 2961 1389 871 494 BtgI C'CryG_G Cuts at: 0 39 5648 5715 Size: 39 5609 67 Fragments arranged by size: 5609 67 39 BtsI GCAGTG_nn' Cuts at: 0 1478 4465 5715 Size: 1478 2987 1250 Fragments arranged by size: 2987 1478 1250 DraI TTT'AAA Cuts at: 0 1076 1658 2579 5715 Size: 1076 582 921 3136 Fragments arranged by size: 3136 1076 921 582 DraIII CAC_nnn'GTG Cuts at: 0 1554 4138 5715 Size: 1554 2584 1577 Fragments arranged by size: 2584 1577 1554 DrdI GACnn_nn'nnGTC Cuts at: 0 4547 5715 Size: 4547 1168 EaeI y'GGCC_r Cuts at: 0 118 3594 5196 5715 Size: 118 3476 1602 519 Fragments arranged by size: 3476 1602 519 118 EagI C'GGCC_G Cuts at: 0 118 5715 Size: 118 5597 EarI CTCTTCn'nnn_ Cuts at: 0 347 773 1690 2652 4150 4719 4820 5715 Size: 347 426 917 962 1498 569 101 895 Fragments arranged by size: 1498 962 917 895 569 426 347 101 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 4727 5715 Size: 4727 988 EcoICRI GAG'CTC Cuts at: 0 2808 5715 Size: 2808 2907 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1710 2176 2437 2839 2970 2996 3314 5048 Size: 1710 466 261 402 131 26 318 1734 Cuts at: 5048 5087 5122 5312 5386 5596 5715 Size: 39 35 190 74 210 119 Fragments arranged by size: 1734 1710 466 402 318 261 210 190 131 119 74 39 35 26 EcoNI CCTnn'n_nnAGG Cuts at: 0 79 2729 3533 4920 5715 Size: 79 2650 804 1387 795 Fragments arranged by size: 2650 1387 804 795 79 EcoO109I rG'GnC_Cy Cuts at: 0 328 1869 3600 4668 4756 5715 Size: 328 1541 1731 1068 88 959 Fragments arranged by size: 1731 1541 1068 959 328 88 EcoRI G'AATT_C Cuts at: 0 1792 4073 5715 Size: 1792 2281 1642 Fragments arranged by size: 2281 1792 1642 EcoRV GAT'ATC Cuts at: 0 3465 4314 5664 5715 Size: 3465 849 1350 51 Fragments arranged by size: 3465 1350 849 51 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 1259 2071 2491 5715 Size: 1259 812 420 3224 Fragments arranged by size: 3224 1259 812 420 HaeII r_GCGC'y Cuts at: 0 1083 5715 Size: 1083 4632 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 434 466 1293 1325 2924 2956 2964 2996 Size: 434 32 827 32 1599 32 8 32 Cuts at: 2996 3144 3176 4003 4035 4047 4079 4114 4146 Size: 148 32 827 32 12 32 35 32 Cuts at: 4146 4360 4392 4505 4537 4630 4662 5715 Size: 214 32 113 32 93 32 1053 Fragments arranged by size: 1599 1053 827 827 434 214 148 113 93 35 32 32 32 32 32 32 32 32 32 32 32 12 8 HincII GTy'rAC Cuts at: 0 1240 2373 2943 3119 4445 5715 Size: 1240 1133 570 176 1326 1270 Fragments arranged by size: 1326 1270 1240 1133 570 176 HindIII A'AGCT_T Cuts at: 0 1166 2860 5715 Size: 1166 1694 2855 Fragments arranged by size: 2855 1694 1166 KpnI G_GTAC'C Cuts at: 0 2753 5715 Size: 2753 2962 MfeI C'AATT_G Cuts at: 0 839 3155 4242 5715 Size: 839 2316 1087 1473 Fragments arranged by size: 2316 1473 1087 839 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 650 1966 2581 2995 5262 5715 Size: 650 1316 615 414 2267 453 Fragments arranged by size: 2267 1316 650 615 453 414 MslI CAynn'nnrTG Cuts at: 0 1210 1776 3365 5715 Size: 1210 566 1589 2350 Fragments arranged by size: 2350 1589 1210 566 MspA1I CmG'CkG Cuts at: 0 117 958 3105 3519 4042 5629 5715 Size: 117 841 2147 414 523 1587 86 Fragments arranged by size: 2147 1587 841 523 414 117 86 NaeI GCC'GGC Cuts at: 0 144 5200 5715 Size: 144 5056 515 Fragments arranged by size: 5056 515 144 NcoI C'CATG_G Cuts at: 0 5648 5715 Size: 5648 67 NgoMIV G'CCGG_C Cuts at: 0 142 5198 5715 Size: 142 5056 517 Fragments arranged by size: 5056 517 142 NsiI A_TGCA'T Cuts at: 0 5378 5715 Size: 5378 337 NspI r_CATG'y Cuts at: 0 66 1006 2281 3398 4683 5175 5380 5434 Size: 66 940 1275 1117 1285 492 205 54 Cuts at: 5434 5715 Size: 281 Fragments arranged by size: 1285 1275 1117 940 492 281 205 66 54 PflMI CCAn_nnn'nTGG Cuts at: 0 1782 5113 5715 Size: 1782 3331 602 Fragments arranged by size: 3331 1782 602 PfoI T'CCnGG_A Cuts at: 0 4970 5715 Size: 4970 745 PmlI CAC'GTG Cuts at: 0 2570 4689 5715 Size: 2570 2119 1026 Fragments arranged by size: 2570 2119 1026 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 5248 5280 5715 Size: 5248 32 435 Fragments arranged by size: 5248 435 32 PpuMI rG'GwC_Cy Cuts at: 0 328 1869 4668 5715 Size: 328 1541 2799 1047 Fragments arranged by size: 2799 1541 1047 328 PsiI TTA'TAA Cuts at: 0 3238 3683 5715 Size: 3238 445 2032 Fragments arranged by size: 3238 2032 445 PspOMI G'GGCC_C Cuts at: 0 3599 5715 Size: 3599 2116 PstI C_TGCA'G Cuts at: 0 4556 5715 Size: 4556 1159 PvuII CAG'CTG Cuts at: 0 958 3105 4042 5629 5715 Size: 958 2147 937 1587 86 Fragments arranged by size: 2147 1587 958 937 86 SacI G_AGCT'C Cuts at: 0 2810 5715 Size: 2810 2905 SalI G'TCGA_C Cuts at: 0 4443 5715 Size: 4443 1272 ScaI AGT'ACT Cuts at: 0 367 5470 5715 Size: 367 5103 245 Fragments arranged by size: 5103 367 245 SexAI A'CCwGG_T Cuts at: 0 4790 5715 Size: 4790 925 SfcI C'TryA_G Cuts at: 0 263 1288 1447 1690 4203 4552 5715 Size: 263 1025 159 243 2513 349 1163 Fragments arranged by size: 2513 1163 1025 349 263 243 159 SfiI GGCCn_nnn'nGGCC Cuts at: 0 44 5715 Size: 44 5671 SmlI C'TyrA_G Cuts at: 0 823 2809 3805 5203 5484 5555 5715 Size: 823 1986 996 1398 281 71 160 Fragments arranged by size: 1986 1398 996 823 281 160 71 SphI G_CATG'C Cuts at: 0 66 5380 5715 Size: 66 5314 335 Fragments arranged by size: 5314 335 66 SspI AAT'ATT Cuts at: 0 177 5715 Size: 177 5538 StuI AGG'CCT Cuts at: 0 4739 5715 Size: 4739 976 StyI C'CwwG_G Cuts at: 0 719 736 1739 2316 2730 2901 5336 5648 Size: 719 17 1003 577 414 171 2435 312 Cuts at: 5648 5657 5715 Size: 9 58 Fragments arranged by size: 2435 1003 719 577 414 312 171 58 17 9 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 4149 4732 5624 5715 Size: 4149 583 892 91 Fragments arranged by size: 4149 892 583 91 TatI w'GTAC_w Cuts at: 0 365 2436 3413 5468 5715 Size: 365 2071 977 2055 247 Fragments arranged by size: 2071 2055 977 365 247 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 1346 1378 2822 2854 5209 5241 5715 Size: 1346 32 1444 32 2355 32 474 Fragments arranged by size: 2355 1444 1346 474 32 32 32 XbaI T'CTAG_A Cuts at: 0 3765 5715 Size: 3765 1950 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 666 3102 5715 Size: 666 2436 2613 Fragments arranged by size: 2613 2436 666 XhoI C'TCGA_G Cuts at: 0 2809 5715 Size: 2809 2906 XmnI GAAnn'nnTTC Cuts at: 0 2027 2411 2606 3649 5715 Size: 2027 384 195 1043 2066 Fragments arranged by size: 2066 2027 1043 384 195 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AfeI AflII AflIII AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AvaI AvrII BaeI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmrI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrDI BsrFI BstAPI BstBI BstEII BstYI BstZ17I Bsu36I BtgI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI HaeII Hin4I HincII HindIII KpnI MfeI MmeI MslI MspA1I NaeI NcoI NgoMIV NsiI NspI PflMI PfoI PmlI PpiI PpuMI PsiI PspOMI PstI PvuII SacI SalI ScaI SexAI SfcI SfiI SmlI SphI SspI StuI StyI TaqII TatI TstI XbaI XcmI XhoI XmnI Enzymes that do not cut: AatII AgeI AloI AscI AsiSI BbeI BmgBI BmtI BplI BsaHI BsiWI BsrBI BsrGI BssHII BssSI BstXI BtgZI ClaI CspCI FseI FspI FspAI HpaI KasI MluI MscI NarI NdeI NheI NotI NruI PacI PasI PciI PmeI PshAI PspXI PsrI PvuI RsrII SacII SanDI SapI SbfI SfoI SgfI SgrAI SmaI SnaBI SpeI SrfI SwaI Tth111I XmaI ZraI