FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6159, 121 aa
  1>>>pF1KE6159 121 - 121 aa - 121 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2327+/-0.000228; mu= 12.9463+/- 0.014
 mean_var=85.7466+/-16.972, 0's: 0 Z-trim(124.8): 5  B-trim: 142 in 1/55
 Lambda= 0.138505
 statistics sampled from 47064 (47071) to 47064 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.857), E-opt: 0.2 (0.552), width:  16
 Scan time:  4.440

The best scores are:                                      opt bits E(85289)
NP_068739 (OMIM: 182099) secretin preproprotein [H ( 121)  831 174.0 5.3e-44
XP_016873598 (OMIM: 182099) PREDICTED: secretin is ( 119)  693 146.4   1e-35


>>NP_068739 (OMIM: 182099) secretin preproprotein [Homo   (121 aa)
 initn: 831 init1: 831 opt: 831  Z-score: 911.0  bits: 174.0 E(85289): 5.3e-44
Smith-Waterman score: 831; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KE6 MAPRPLLLLLLLLGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MAPRPLLLLLLLLGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DAENSMAWTRLSAGLLCPSGSNMPILQAWMPLDGTWSPWLPPGPMVSEPAGAAAEGTLRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 DAENSMAWTRLSAGLLCPSGSNMPILQAWMPLDGTWSPWLPPGPMVSEPAGAAAEGTLRP
               70        80        90       100       110       120

        
pF1KE6 R
       :
NP_068 R
        

>>XP_016873598 (OMIM: 182099) PREDICTED: secretin isofor  (119 aa)
 initn: 693 init1: 693 opt: 693  Z-score: 762.0  bits: 146.4 E(85289): 1e-35
Smith-Waterman score: 693; 99.0% identity (99.0% similar) in 101 aa overlap (21-121:19-119)

               10        20        30        40        50        60
pF1KE6 MAPRPLLLLLLLLGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQ
                           :: :::::::::::::::::::::::::::::::::::::
XP_016   MATPAPQQSRHAEAGDELAPARARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQ
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE6 DAENSMAWTRLSAGLLCPSGSNMPILQAWMPLDGTWSPWLPPGPMVSEPAGAAAEGTLRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAENSMAWTRLSAGLLCPSGSNMPILQAWMPLDGTWSPWLPPGPMVSEPAGAAAEGTLRP
       60        70        80        90       100       110        

        
pF1KE6 R
       :
XP_016 R
        




121 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:57:52 2016 done: Tue Nov  8 09:57:52 2016
 Total Scan time:  4.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]