FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6159, 121 aa
  1>>>pF1KE6159 121 - 121 aa - 121 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2568+/-0.000498; mu= 12.7953+/- 0.030
 mean_var=81.3977+/-16.250, 0's: 0 Z-trim(117.5): 6  B-trim: 438 in 1/52
 Lambda= 0.142157
 statistics sampled from 18283 (18286) to 18283 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.863), E-opt: 0.2 (0.562), width:  16
 Scan time:  1.270

The best scores are:                                      opt bits E(32554)
CCDS7709.1 SCT gene_id:6343|Hs108|chr11            ( 121)  831 178.1 1.1e-45


>>CCDS7709.1 SCT gene_id:6343|Hs108|chr11                 (121 aa)
 initn: 831 init1: 831 opt: 831  Z-score: 933.4  bits: 178.1 E(32554): 1.1e-45
Smith-Waterman score: 831; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KE6 MAPRPLLLLLLLLGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MAPRPLLLLLLLLGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DAENSMAWTRLSAGLLCPSGSNMPILQAWMPLDGTWSPWLPPGPMVSEPAGAAAEGTLRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DAENSMAWTRLSAGLLCPSGSNMPILQAWMPLDGTWSPWLPPGPMVSEPAGAAAEGTLRP
               70        80        90       100       110       120

        
pF1KE6 R
       :
CCDS77 R
        




121 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:57:51 2016 done: Tue Nov  8 09:57:51 2016
 Total Scan time:  1.270 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]