Result of FASTA (ccds) for
pFN21AE6143
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6143, 61 aa
1>>>pF1KE6143 61 - 61 aa - 61 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1163+/-0.000776; mu= 4.3662+/- 0.047
mean_var=154.2925+/-29.277, 0's: 0 Z-trim(115.1): 61 B-trim: 28 in 1/52
Lambda= 0.103253
statistics sampled from 15546 (15611) to 15546 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.48), width: 16
Scan time: 1.090
The best scores are: opt bits E(32554)
CCDS32454.1 MT1A gene_id:4489|Hs108|chr16 ( 61) 506 84.7 3.8e-18
CCDS10764.2 MT1E gene_id:4493|Hs108|chr16 ( 61) 489 82.2 2.2e-17
CCDS10763.1 MT2A gene_id:4502|Hs108|chr16 ( 61) 472 79.7 1.3e-16
CCDS10767.1 MT1H gene_id:4496|Hs108|chr16 ( 61) 471 79.5 1.4e-16
CCDS10766.1 MT1G gene_id:4495|Hs108|chr16 ( 61) 465 78.6 2.6e-16
CCDS10765.1 MT1B gene_id:4490|Hs108|chr16 ( 61) 463 78.3 3.2e-16
CCDS32456.1 MT1F gene_id:4494|Hs108|chr16 ( 61) 463 78.3 3.2e-16
CCDS76873.1 MT1G gene_id:4495|Hs108|chr16 ( 62) 457 77.4 6e-16
CCDS10768.1 MT1X gene_id:4501|Hs108|chr16 ( 61) 454 77.0 8.1e-16
CCDS31068.1 MT1HL1 gene_id:645745|Hs108|chr1 ( 61) 444 75.5 2.3e-15
CCDS42166.1 MT1M gene_id:4499|Hs108|chr16 ( 61) 440 74.9 3.4e-15
CCDS10762.1 MT3 gene_id:4504|Hs108|chr16 ( 68) 373 65.0 3.7e-12
CCDS42165.1 MT4 gene_id:84560|Hs108|chr16 ( 62) 348 61.2 4.6e-11
>>CCDS32454.1 MT1A gene_id:4489|Hs108|chr16 (61 aa)
initn: 506 init1: 506 opt: 506 Z-score: 439.3 bits: 84.7 E(32554): 3.8e-18
Smith-Waterman score: 506; 98.4% identity (100.0% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE6 MDPNCSCATGGSCTCTGSCKCKECKCNSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS32 MDPNCSCATGGSCTCTGSCKCKECKCTSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
10 20 30 40 50 60
pF1KE6 A
:
CCDS32 A
>>CCDS10764.2 MT1E gene_id:4493|Hs108|chr16 (61 aa)
initn: 489 init1: 489 opt: 489 Z-score: 425.6 bits: 82.2 E(32554): 2.2e-17
Smith-Waterman score: 489; 91.8% identity (100.0% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE6 MDPNCSCATGGSCTCTGSCKCKECKCNSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
:::::::::::::::.::::::::::.:::::::::::..::::::::.:::::::::::
CCDS10 MDPNCSCATGGSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCVCKGASEKCSCC
10 20 30 40 50 60
pF1KE6 A
:
CCDS10 A
>>CCDS10763.1 MT2A gene_id:4502|Hs108|chr16 (61 aa)
initn: 472 init1: 472 opt: 472 Z-score: 412.0 bits: 79.7 E(32554): 1.3e-16
Smith-Waterman score: 472; 88.5% identity (98.4% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE6 MDPNCSCATGGSCTCTGSCKCKECKCNSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
::::::::.: ::::.::::::::::.:::::::::::..::::::::::::::.:::::
CCDS10 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
10 20 30 40 50 60
pF1KE6 A
:
CCDS10 A
>>CCDS10767.1 MT1H gene_id:4496|Hs108|chr16 (61 aa)
initn: 471 init1: 471 opt: 471 Z-score: 411.2 bits: 79.5 E(32554): 1.4e-16
Smith-Waterman score: 471; 86.9% identity (98.4% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE6 MDPNCSCATGGSCTCTGSCKCKECKCNSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
::::::: .::::.:.::::::.:::.:::::::::::..::::::::::::::::::::
CCDS10 MDPNCSCEAGGSCACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCICKGASEKCSCC
10 20 30 40 50 60
pF1KE6 A
:
CCDS10 A
>>CCDS10766.1 MT1G gene_id:4495|Hs108|chr16 (61 aa)
initn: 465 init1: 465 opt: 465 Z-score: 406.3 bits: 78.6 E(32554): 2.6e-16
Smith-Waterman score: 465; 88.5% identity (98.4% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE6 MDPNCSCATGGSCTCTGSCKCKECKCNSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
::::::::.: ::::..:::::::::.:::::::::::..::::::::::::::::::::
CCDS10 MDPNCSCAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSCC
10 20 30 40 50 60
pF1KE6 A
:
CCDS10 A
>>CCDS10765.1 MT1B gene_id:4490|Hs108|chr16 (61 aa)
initn: 463 init1: 463 opt: 463 Z-score: 404.7 bits: 78.3 E(32554): 3.2e-16
Smith-Waterman score: 463; 83.6% identity (96.7% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE6 MDPNCSCATGGSCTCTGSCKCKECKCNSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
:::::::.:::::.:.::::::::::.:::: ::::::..::::::::.:::.:::: ::
CCDS10 MDPNCSCTTGGSCACAGSCKCKECKCTSCKKCCCSCCPVGCAKCAQGCVCKGSSEKCRCC
10 20 30 40 50 60
pF1KE6 A
:
CCDS10 A
>>CCDS32456.1 MT1F gene_id:4494|Hs108|chr16 (61 aa)
initn: 463 init1: 463 opt: 463 Z-score: 404.7 bits: 78.3 E(32554): 3.2e-16
Smith-Waterman score: 463; 86.7% identity (98.3% similar) in 60 aa overlap (1-60:1-60)
10 20 30 40 50 60
pF1KE6 MDPNCSCATGGSCTCTGSCKCKECKCNSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
::::::::.: ::::.::::::::::.:::::::::::..:.::::::.:::::::::::
CCDS32 MDPNCSCAAGVSCTCAGSCKCKECKCTSCKKSCCSCCPVGCSKCAQGCVCKGASEKCSCC
10 20 30 40 50 60
pF1KE6 A
CCDS32 D
>>CCDS76873.1 MT1G gene_id:4495|Hs108|chr16 (62 aa)
initn: 402 init1: 402 opt: 457 Z-score: 399.8 bits: 77.4 E(32554): 6e-16
Smith-Waterman score: 457; 87.1% identity (98.4% similar) in 62 aa overlap (1-61:1-62)
10 20 30 40 50
pF1KE6 MDPNCSCATGG-SCTCTGSCKCKECKCNSCKKSCCSCCPMSCAKCAQGCICKGASEKCSC
::::::::..: ::::..:::::::::.:::::::::::..:::::::::::::::::::
CCDS76 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
10 20 30 40 50 60
60
pF1KE6 CA
::
CCDS76 CA
>>CCDS10768.1 MT1X gene_id:4501|Hs108|chr16 (61 aa)
initn: 454 init1: 454 opt: 454 Z-score: 397.5 bits: 77.0 E(32554): 8.1e-16
Smith-Waterman score: 454; 83.6% identity (96.7% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE6 MDPNCSCATGGSCTCTGSCKCKECKCNSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
:::::::. :::.:.::::::::::.:::::::::::..::::::::::::.:.:::::
CCDS10 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
10 20 30 40 50 60
pF1KE6 A
:
CCDS10 A
>>CCDS31068.1 MT1HL1 gene_id:645745|Hs108|chr1 (61 aa)
initn: 444 init1: 444 opt: 444 Z-score: 389.4 bits: 75.5 E(32554): 2.3e-15
Smith-Waterman score: 444; 85.2% identity (96.7% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE6 MDPNCSCATGGSCTCTGSCKCKECKCNSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
::::::::.::: .:.::::::.:::.:::::::::::..::::::::: ::::::::::
CCDS31 MDPNCSCAAGGSYACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCIRKGASEKCSCC
10 20 30 40 50 60
pF1KE6 A
:
CCDS31 A
61 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:50:24 2016 done: Tue Nov 8 09:50:25 2016
Total Scan time: 1.090 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]