Result of FASTA (omim) for
pFN21AE9278
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9278, 63 aa
1>>>pF1KE9278 63 - 63 aa - 63 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5808+/-0.000234; mu= 9.7846+/- 0.015
mean_var=47.3597+/- 9.533, 0's: 0 Z-trim(121.4): 8 B-trim: 50 in 2/53
Lambda= 0.186367
statistics sampled from 37852 (37861) to 37852 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.444), width: 16
Scan time: 3.380
The best scores are: opt bits E(85289)
NP_659435 (OMIM: 615128) centromere protein X isof ( 63) 397 113.0 3.3e-26
XP_016879818 (OMIM: 615128) PREDICTED: centromere ( 76) 372 106.3 4.1e-24
NP_001257936 (OMIM: 615128) centromere protein X i ( 58) 345 99.0 5e-22
NP_001257935 (OMIM: 615128) centromere protein X i ( 81) 206 61.7 1.2e-10
XP_016879817 (OMIM: 615128) PREDICTED: centromere ( 94) 191 57.7 2.2e-09
NP_001317465 (OMIM: 615128) centromere protein X i ( 131) 191 57.7 2.9e-09
XP_016879816 (OMIM: 615128) PREDICTED: centromere ( 149) 191 57.8 3.3e-09
XP_016879815 (OMIM: 615128) PREDICTED: centromere ( 165) 191 57.8 3.6e-09
>>NP_659435 (OMIM: 615128) centromere protein X isoform (63 aa)
initn: 397 init1: 397 opt: 397 Z-score: 591.4 bits: 113.0 E(85289): 3.3e-26
Smith-Waterman score: 397; 98.4% identity (100.0% similar) in 63 aa overlap (1-63:1-63)
10 20 30 40 50 60
pF1KE9 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRADVDQLEKVLPQLL
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_659 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRVDVDQLEKVLPQLL
10 20 30 40 50 60
pF1KE9 LDF
:::
NP_659 LDF
>>XP_016879818 (OMIM: 615128) PREDICTED: centromere prot (76 aa)
initn: 388 init1: 372 opt: 372 Z-score: 553.8 bits: 106.3 E(85289): 4.1e-24
Smith-Waterman score: 372; 96.7% identity (100.0% similar) in 60 aa overlap (1-60:1-60)
10 20 30 40 50 60
pF1KE9 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRADVDQLEKVLPQLL
::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::.
XP_016 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRVDVDQLEKVLPQLV
10 20 30 40 50 60
pF1KE9 LDF
XP_016 RERGSGRKWGCPAGWP
70
>>NP_001257936 (OMIM: 615128) centromere protein X isofo (58 aa)
initn: 361 init1: 345 opt: 345 Z-score: 516.4 bits: 99.0 E(85289): 5e-22
Smith-Waterman score: 345; 96.4% identity (100.0% similar) in 56 aa overlap (1-56:1-56)
10 20 30 40 50 60
pF1KE9 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRADVDQLEKVLPQLL
::::::::::::::::::::::::::::::::::::::::::::::.:::::::.:
NP_001 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRVDVDQLEKLLDF
10 20 30 40 50
pF1KE9 LDF
>>NP_001257935 (OMIM: 615128) centromere protein X isofo (81 aa)
initn: 383 init1: 206 opt: 206 Z-score: 312.2 bits: 61.7 E(85289): 1.2e-10
Smith-Waterman score: 351; 76.5% identity (77.8% similar) in 81 aa overlap (1-63:1-81)
10 20 30 40
pF1KE9 MEGAGAGSGFRKELVSRLLHLHFKDDKTK------------------EAAVRGVRQAQAE
::::::::::::::::::::::::::::: :::::::::::::
NP_001 MEGAGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAE
10 20 30 40 50 60
50 60
pF1KE9 DALRADVDQLEKVLPQLLLDF
::::.::::::::::::::::
NP_001 DALRVDVDQLEKVLPQLLLDF
70 80
>>XP_016879817 (OMIM: 615128) PREDICTED: centromere prot (94 aa)
initn: 363 init1: 191 opt: 191 Z-score: 289.4 bits: 57.7 E(85289): 2.2e-09
Smith-Waterman score: 326; 74.4% identity (76.9% similar) in 78 aa overlap (1-60:1-78)
10 20 30 40
pF1KE9 MEGAGAGSGFRKELVSRLLHLHFKDDKTK------------------EAAVRGVRQAQAE
::::::::::::::::::::::::::::: :::::::::::::
XP_016 MEGAGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAE
10 20 30 40 50 60
50 60
pF1KE9 DALRADVDQLEKVLPQLLLDF
::::.::::::::::::.
XP_016 DALRVDVDQLEKVLPQLVRERGSGRKWGCPAGWP
70 80 90
>>NP_001317465 (OMIM: 615128) centromere protein X isofo (131 aa)
initn: 191 init1: 191 opt: 191 Z-score: 287.2 bits: 57.7 E(85289): 2.9e-09
Smith-Waterman score: 191; 100.0% identity (100.0% similar) in 29 aa overlap (1-29:1-29)
10 20 30 40 50 60
pF1KE9 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRADVDQLEKVLPQLL
:::::::::::::::::::::::::::::
NP_001 MEGAGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVGEPRAHAPSGHSI
10 20 30 40 50 60
>>XP_016879816 (OMIM: 615128) PREDICTED: centromere prot (149 aa)
initn: 204 init1: 191 opt: 191 Z-score: 286.3 bits: 57.8 E(85289): 3.3e-09
Smith-Waterman score: 191; 100.0% identity (100.0% similar) in 29 aa overlap (1-29:1-29)
10 20 30 40 50 60
pF1KE9 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRADVDQLEKVLPQLL
:::::::::::::::::::::::::::::
XP_016 MEGAGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVGEPRAHAPSGHSI
10 20 30 40 50 60
>>XP_016879815 (OMIM: 615128) PREDICTED: centromere prot (165 aa)
initn: 200 init1: 191 opt: 191 Z-score: 285.7 bits: 57.8 E(85289): 3.6e-09
Smith-Waterman score: 191; 100.0% identity (100.0% similar) in 29 aa overlap (1-29:1-29)
10 20 30 40 50 60
pF1KE9 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRADVDQLEKVLPQLL
:::::::::::::::::::::::::::::
XP_016 MEGAGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVGEPRAHAPSGHSI
10 20 30 40 50 60
63 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:16:34 2016 done: Tue Nov 8 10:16:35 2016
Total Scan time: 3.380 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]