FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5106, 51 aa 1>>>pF1KE5106 51 - 51 aa - 51 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.0948+/-0.00023; mu= 10.9493+/- 0.015 mean_var=43.6939+/- 8.837, 0's: 0 Z-trim(122.1): 2 B-trim: 1958 in 1/52 Lambda= 0.194028 statistics sampled from 39816 (39818) to 39816 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.467), width: 16 Scan time: 3.350 The best scores are: opt bits E(85289) NP_000991 (OMIM: 300899) 60S ribosomal protein L39 ( 51) 353 104.5 7.6e-24 NP_443201 (OMIM: 607547) 60S ribosomal protein L39 ( 51) 327 97.2 1.2e-21 >>NP_000991 (OMIM: 300899) 60S ribosomal protein L39 [Ho (51 aa) initn: 353 init1: 353 opt: 353 Z-score: 549.0 bits: 104.5 E(85289): 7.6e-24 Smith-Waterman score: 353; 100.0% identity (100.0% similar) in 51 aa overlap (1-51:1-51) 10 20 30 40 50 pF1KE5 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 10 20 30 40 50 >>NP_443201 (OMIM: 607547) 60S ribosomal protein L39-lik (51 aa) initn: 327 init1: 327 opt: 327 Z-score: 509.7 bits: 97.2 E(85289): 1.2e-21 Smith-Waterman score: 327; 92.2% identity (96.1% similar) in 51 aa overlap (1-51:1-51) 10 20 30 40 50 pF1KE5 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL ::::::: :::::::::::::::::::.:: :.:::::::::::::::::: NP_443 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 10 20 30 40 50 51 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:22:30 2016 done: Mon Nov 7 21:22:31 2016 Total Scan time: 3.350 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]