FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5106, 51 aa 1>>>pF1KE5106 51 - 51 aa - 51 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.0333+/-0.000455; mu= 11.3182+/- 0.028 mean_var=43.9810+/- 8.789, 0's: 0 Z-trim(114.8): 3 B-trim: 0 in 0/52 Lambda= 0.193393 statistics sampled from 15361 (15363) to 15361 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.854), E-opt: 0.2 (0.472), width: 16 Scan time: 1.170 The best scores are: opt bits E(32554) CCDS14586.1 RPL39 gene_id:6170|Hs108|chrX ( 51) 353 104.2 3.7e-24 CCDS3286.1 RPL39L gene_id:116832|Hs108|chr3 ( 51) 327 96.9 5.7e-22 >>CCDS14586.1 RPL39 gene_id:6170|Hs108|chrX (51 aa) initn: 353 init1: 353 opt: 353 Z-score: 547.2 bits: 104.2 E(32554): 3.7e-24 Smith-Waterman score: 353; 100.0% identity (100.0% similar) in 51 aa overlap (1-51:1-51) 10 20 30 40 50 pF1KE5 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 10 20 30 40 50 >>CCDS3286.1 RPL39L gene_id:116832|Hs108|chr3 (51 aa) initn: 327 init1: 327 opt: 327 Z-score: 508.0 bits: 96.9 E(32554): 5.7e-22 Smith-Waterman score: 327; 92.2% identity (96.1% similar) in 51 aa overlap (1-51:1-51) 10 20 30 40 50 pF1KE5 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL ::::::: :::::::::::::::::::.:: :.:::::::::::::::::: CCDS32 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 10 20 30 40 50 51 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:22:30 2016 done: Mon Nov 7 21:22:30 2016 Total Scan time: 1.170 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]