FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6154, 78 aa 1>>>pF1KE6154 78 - 78 aa - 78 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.4507+/-0.000364; mu= 12.5265+/- 0.023 mean_var=50.9027+/-10.698, 0's: 0 Z-trim(111.6): 19 B-trim: 2295 in 2/50 Lambda= 0.179764 statistics sampled from 20180 (20199) to 20180 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.237), width: 16 Scan time: 2.310 The best scores are: opt bits E(85289) XP_016863629 (OMIM: 138590) PREDICTED: glycophorin ( 78) 476 130.7 2.4e-31 NP_002093 (OMIM: 138590) glycophorin-E precursor [ ( 78) 476 130.7 2.4e-31 XP_016863628 (OMIM: 138590) PREDICTED: glycophorin ( 78) 476 130.7 2.4e-31 NP_941391 (OMIM: 138590) glycophorin-E precursor [ ( 78) 476 130.7 2.4e-31 NP_002091 (OMIM: 111740,611162) glycophorin-B isof ( 91) 276 78.8 1.1e-15 XP_011530205 (OMIM: 111740,611162) PREDICTED: glyc ( 96) 276 78.8 1.2e-15 NP_001295116 (OMIM: 111300,611162) glycophorin-A i ( 137) 228 66.5 8.8e-12 XP_016863623 (OMIM: 111300,611162) PREDICTED: glyc ( 145) 228 66.5 9.2e-12 NP_002090 (OMIM: 111300,611162) glycophorin-A isof ( 150) 228 66.5 9.4e-12 XP_011530207 (OMIM: 111740,611162) PREDICTED: glyc ( 82) 207 60.9 2.5e-10 XP_011530206 (OMIM: 111740,611162) PREDICTED: glyc ( 87) 207 60.9 2.7e-10 XP_016863626 (OMIM: 111740,611162) PREDICTED: glyc ( 65) 158 48.1 1.4e-06 NP_001291311 (OMIM: 111740,611162) glycophorin-B i ( 65) 158 48.1 1.4e-06 XP_016863625 (OMIM: 111300,611162) PREDICTED: glyc ( 112) 128 40.5 0.00048 NP_001295119 (OMIM: 111300,611162) glycophorin-A i ( 117) 128 40.5 0.00049 >>XP_016863629 (OMIM: 138590) PREDICTED: glycophorin-E i (78 aa) initn: 476 init1: 476 opt: 476 Z-score: 683.7 bits: 130.7 E(85289): 2.4e-31 Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78) 10 20 30 40 50 60 pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF 10 20 30 40 50 60 70 pF1KE6 EVMLVVVGMIILISYCIR :::::::::::::::::: XP_016 EVMLVVVGMIILISYCIR 70 >>NP_002093 (OMIM: 138590) glycophorin-E precursor [Homo (78 aa) initn: 476 init1: 476 opt: 476 Z-score: 683.7 bits: 130.7 E(85289): 2.4e-31 Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78) 10 20 30 40 50 60 pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF 10 20 30 40 50 60 70 pF1KE6 EVMLVVVGMIILISYCIR :::::::::::::::::: NP_002 EVMLVVVGMIILISYCIR 70 >>XP_016863628 (OMIM: 138590) PREDICTED: glycophorin-E i (78 aa) initn: 476 init1: 476 opt: 476 Z-score: 683.7 bits: 130.7 E(85289): 2.4e-31 Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78) 10 20 30 40 50 60 pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF 10 20 30 40 50 60 70 pF1KE6 EVMLVVVGMIILISYCIR :::::::::::::::::: XP_016 EVMLVVVGMIILISYCIR 70 >>NP_941391 (OMIM: 138590) glycophorin-E precursor [Homo (78 aa) initn: 476 init1: 476 opt: 476 Z-score: 683.7 bits: 130.7 E(85289): 2.4e-31 Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78) 10 20 30 40 50 60 pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_941 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF 10 20 30 40 50 60 70 pF1KE6 EVMLVVVGMIILISYCIR :::::::::::::::::: NP_941 EVMLVVVGMIILISYCIR 70 >>NP_002091 (OMIM: 111740,611162) glycophorin-B isoform (91 aa) initn: 298 init1: 237 opt: 276 Z-score: 402.4 bits: 78.8 E(85289): 1.1e-15 Smith-Waterman score: 276; 65.1% identity (76.7% similar) in 86 aa overlap (1-78:1-86) 10 20 30 40 50 pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWAMAR- :::::::::::: :::::: ::: :::::::::::::::::::::: : :.. ... NP_002 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP 10 20 30 40 50 60 60 70 pF1KE6 -----VIFEVMLVVVGMIILISYCIR .:. :: ..: :.:::: :: NP_002 VVIILIILCVMAGIIGTILLISYTIRRLIKA 70 80 90 >>XP_011530205 (OMIM: 111740,611162) PREDICTED: glycopho (96 aa) initn: 298 init1: 237 opt: 276 Z-score: 402.0 bits: 78.8 E(85289): 1.2e-15 Smith-Waterman score: 276; 65.1% identity (76.7% similar) in 86 aa overlap (1-78:1-86) 10 20 30 40 50 pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWAMAR- :::::::::::: :::::: ::: :::::::::::::::::::::: : :.. ... XP_011 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP 10 20 30 40 50 60 60 70 pF1KE6 -----VIFEVMLVVVGMIILISYCIR .:. :: ..: :.:::: :: XP_011 VVIILIILCVMAGIIGTILLISYSIRRLIKVTALNV 70 80 90 >>NP_001295116 (OMIM: 111300,611162) glycophorin-A isofo (137 aa) initn: 289 init1: 228 opt: 228 Z-score: 332.6 bits: 66.5 E(85289): 8.8e-12 Smith-Waterman score: 239; 54.9% identity (61.8% similar) in 102 aa overlap (1-78:1-102) 10 20 30 40 50 pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWA------ :::::::::::: :::::: ::: ::::::::::::::::::::: . .: NP_001 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 10 20 30 40 50 60 60 70 pF1KE6 ------------------MARVIFEVMLVVVGMIILISYCIR .. .:: :: :.: :.:::: :: NP_001 EVSEISVRTVYPPEEETEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDT 70 80 90 100 110 120 NP_001 DVPLSSVEIENPETSDQ 130 >>XP_016863623 (OMIM: 111300,611162) PREDICTED: glycopho (145 aa) initn: 289 init1: 228 opt: 228 Z-score: 332.2 bits: 66.5 E(85289): 9.2e-12 Smith-Waterman score: 228; 93.3% identity (93.3% similar) in 45 aa overlap (1-45:1-45) 10 20 30 40 50 60 pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF :::::::::::: :::::: ::: ::::::::::::::::::::: XP_016 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 10 20 30 40 50 60 70 pF1KE6 EVMLVVVGMIILISYCIR XP_016 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKR 70 80 90 100 110 120 >>NP_002090 (OMIM: 111300,611162) glycophorin-A isoform (150 aa) initn: 289 init1: 228 opt: 228 Z-score: 332.0 bits: 66.5 E(85289): 9.4e-12 Smith-Waterman score: 228; 93.3% identity (93.3% similar) in 45 aa overlap (1-45:1-45) 10 20 30 40 50 60 pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF :::::::::::: :::::: ::: ::::::::::::::::::::: NP_002 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 10 20 30 40 50 60 70 pF1KE6 EVMLVVVGMIILISYCIR NP_002 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK 70 80 90 100 110 120 >>XP_011530207 (OMIM: 111740,611162) PREDICTED: glycopho (82 aa) initn: 229 init1: 168 opt: 207 Z-score: 306.3 bits: 60.9 E(85289): 2.5e-10 Smith-Waterman score: 207; 60.3% identity (74.0% similar) in 73 aa overlap (14-78:5-77) 10 20 30 40 50 pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWAMAR- :::::: ::: :::::::::::::::::::::: : :.. ... XP_011 MSKEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP 10 20 30 40 50 60 70 pF1KE6 -----VIFEVMLVVVGMIILISYCIR .:. :: ..: :.:::: :: XP_011 VVIILIILCVMAGIIGTILLISYSIRRLIKA 60 70 80 78 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:55:19 2016 done: Tue Nov 8 09:55:20 2016 Total Scan time: 2.310 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]