FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1009, 220 aa 1>>>pF1KE1009 220 - 220 aa - 220 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.3134+/-0.000293; mu= -2.1658+/- 0.018 mean_var=232.9800+/-47.791, 0's: 0 Z-trim(125.8): 3 B-trim: 823 in 1/57 Lambda= 0.084026 statistics sampled from 50415 (50418) to 50415 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.858), E-opt: 0.2 (0.591), width: 16 Scan time: 6.750 The best scores are: opt bits E(85289) NP_150601 (OMIM: 606185) tumor protein p53-inducib ( 240) 337 52.2 8.7e-07 XP_011515688 (OMIM: 606185) PREDICTED: tumor prote ( 240) 337 52.2 8.7e-07 >>NP_150601 (OMIM: 606185) tumor protein p53-inducible n (240 aa) initn: 393 init1: 167 opt: 337 Z-score: 242.9 bits: 52.2 E(85289): 8.7e-07 Smith-Waterman score: 355; 30.8% identity (56.1% similar) in 253 aa overlap (1-220:1-240) 10 20 30 40 50 pF1KE1 MFQRLSSLFFSTPSPPEDPDCPRAFVSEEDEVDGWLIIDLPDS---YAAPPSPGAAPAPA :::::...: . : . . :. : .:: : :...:. :. ..: NP_150 MFQRLNKMFVGEVSSSSNQE-PE-FNEKED--DEWILVDFIDTCTGFSAEEEEEEEDISE 10 20 30 40 50 60 70 80 90 pF1KE1 GRPPPAPSL--------------------------MDESWFVTPPACFTAEGPGLGPARL : ::. :.::::.::: :::: : :: .. NP_150 ESPTEHPSVFSCLPASLECLADTSDSCFLQFESCPMEESWFITPPPCFTA-G-GLTTIKV 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE1 QSSPLEDLLIEHPSMSVYVTGSTIVLEPGSPSPLPDAALPDGDLSEGELTPARREPRAAR ..::.:.:::::::::::.. .. :: : .:. .: .. . . .. NP_150 ETSPMENLLIEHPSMSVYAVHNSC---PG----LSEATRGTDELHSPSSPRVEAQNEMGQ 120 130 140 150 160 160 170 180 190 200 pF1KE1 H----AAPLPARAALLEKAGQVRRLQRARQRAERHALSAKAVQRQNRARESRPRRSKNQS : .: : :....::. . : : ....::. :. ....::: .:. .::. :... NP_150 HIHCYVAALAAHTTFLEQPKSFRPSQWIKEHSERQPLNRNSLRRQNLTRDCHPRQVKHNG 170 180 190 200 210 220 210 220 pF1KE1 SFIYQPCQRQFNY ..::: ::.:: NP_150 WVVHQPCPRQYNY 230 240 >>XP_011515688 (OMIM: 606185) PREDICTED: tumor protein p (240 aa) initn: 393 init1: 167 opt: 337 Z-score: 242.9 bits: 52.2 E(85289): 8.7e-07 Smith-Waterman score: 355; 30.8% identity (56.1% similar) in 253 aa overlap (1-220:1-240) 10 20 30 40 50 pF1KE1 MFQRLSSLFFSTPSPPEDPDCPRAFVSEEDEVDGWLIIDLPDS---YAAPPSPGAAPAPA :::::...: . : . . :. : .:: : :...:. :. ..: XP_011 MFQRLNKMFVGEVSSSSNQE-PE-FNEKED--DEWILVDFIDTCTGFSAEEEEEEEDISE 10 20 30 40 50 60 70 80 90 pF1KE1 GRPPPAPSL--------------------------MDESWFVTPPACFTAEGPGLGPARL : ::. :.::::.::: :::: : :: .. XP_011 ESPTEHPSVFSCLPASLECLADTSDSCFLQFESCPMEESWFITPPPCFTA-G-GLTTIKV 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE1 QSSPLEDLLIEHPSMSVYVTGSTIVLEPGSPSPLPDAALPDGDLSEGELTPARREPRAAR ..::.:.:::::::::::.. .. :: : .:. .: .. . . .. XP_011 ETSPMENLLIEHPSMSVYAVHNSC---PG----LSEATRGTDELHSPSSPRVEAQNEMGQ 120 130 140 150 160 160 170 180 190 200 pF1KE1 H----AAPLPARAALLEKAGQVRRLQRARQRAERHALSAKAVQRQNRARESRPRRSKNQS : .: : :....::. . : : ....::. :. ....::: .:. .::. :... XP_011 HIHCYVAALAAHTTFLEQPKSFRPSQWIKEHSERQPLNRNSLRRQNLTRDCHPRQVKHNG 170 180 190 200 210 220 210 220 pF1KE1 SFIYQPCQRQFNY ..::: ::.:: XP_011 WVVHQPCPRQYNY 230 240 220 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:12:21 2016 done: Sun Nov 6 20:12:22 2016 Total Scan time: 6.750 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]