FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1009, 220 aa
  1>>>pF1KE1009 220 - 220 aa - 220 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8118+/-0.000722; mu= 1.2001+/- 0.044
 mean_var=230.9892+/-47.368, 0's: 0 Z-trim(118.3): 3  B-trim: 177 in 1/53
 Lambda= 0.084388
 statistics sampled from 19208 (19211) to 19208 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.861), E-opt: 0.2 (0.59), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS13240.1 TP53INP2 gene_id:58476|Hs108|chr20     ( 220) 1517 195.9 1.7e-50


>>CCDS13240.1 TP53INP2 gene_id:58476|Hs108|chr20          (220 aa)
 initn: 1517 init1: 1517 opt: 1517  Z-score: 1020.2  bits: 195.9 E(32554): 1.7e-50
Smith-Waterman score: 1517; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KE1 MFQRLSSLFFSTPSPPEDPDCPRAFVSEEDEVDGWLIIDLPDSYAAPPSPGAAPAPAGRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MFQRLSSLFFSTPSPPEDPDCPRAFVSEEDEVDGWLIIDLPDSYAAPPSPGAAPAPAGRP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PPAPSLMDESWFVTPPACFTAEGPGLGPARLQSSPLEDLLIEHPSMSVYVTGSTIVLEPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PPAPSLMDESWFVTPPACFTAEGPGLGPARLQSSPLEDLLIEHPSMSVYVTGSTIVLEPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SPSPLPDAALPDGDLSEGELTPARREPRAARHAAPLPARAALLEKAGQVRRLQRARQRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPSPLPDAALPDGDLSEGELTPARREPRAARHAAPLPARAALLEKAGQVRRLQRARQRAE
              130       140       150       160       170       180

              190       200       210       220
pF1KE1 RHALSAKAVQRQNRARESRPRRSKNQSSFIYQPCQRQFNY
       ::::::::::::::::::::::::::::::::::::::::
CCDS13 RHALSAKAVQRQNRARESRPRRSKNQSSFIYQPCQRQFNY
              190       200       210       220




220 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:12:20 2016 done: Sun Nov  6 20:12:20 2016
 Total Scan time:  2.580 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]