FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2240, 80 aa 1>>>pF1KE2240 80 - 80 aa - 80 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7634+/-0.000267; mu= 6.1149+/- 0.017 mean_var=68.9996+/-13.624, 0's: 0 Z-trim(120.1): 4 B-trim: 0 in 0/54 Lambda= 0.154401 statistics sampled from 34939 (34943) to 34939 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.41), width: 16 Scan time: 3.590 The best scores are: opt bits E(85289) NP_001278667 (OMIM: 600074) signal transducer CD24 ( 80) 469 112.2 8.9e-26 NP_037362 (OMIM: 600074) signal transducer CD24 is ( 80) 469 112.2 8.9e-26 NP_001278666 (OMIM: 600074) signal transducer CD24 ( 80) 469 112.2 8.9e-26 NP_001278668 (OMIM: 600074) signal transducer CD24 ( 129) 332 81.8 2.1e-16 >>NP_001278667 (OMIM: 600074) signal transducer CD24 iso (80 aa) initn: 469 init1: 469 opt: 469 Z-score: 583.8 bits: 112.2 E(85289): 8.9e-26 Smith-Waterman score: 469; 98.8% identity (100.0% similar) in 80 aa overlap (1-80:1-80) 10 20 30 40 50 60 pF1KE2 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKVAGG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_001 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKAAGG 10 20 30 40 50 60 70 80 pF1KE2 ALQSTASLFVVSLSLLHLYS :::::::::::::::::::: NP_001 ALQSTASLFVVSLSLLHLYS 70 80 >>NP_037362 (OMIM: 600074) signal transducer CD24 isofor (80 aa) initn: 469 init1: 469 opt: 469 Z-score: 583.8 bits: 112.2 E(85289): 8.9e-26 Smith-Waterman score: 469; 98.8% identity (100.0% similar) in 80 aa overlap (1-80:1-80) 10 20 30 40 50 60 pF1KE2 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKVAGG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_037 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKAAGG 10 20 30 40 50 60 70 80 pF1KE2 ALQSTASLFVVSLSLLHLYS :::::::::::::::::::: NP_037 ALQSTASLFVVSLSLLHLYS 70 80 >>NP_001278666 (OMIM: 600074) signal transducer CD24 iso (80 aa) initn: 469 init1: 469 opt: 469 Z-score: 583.8 bits: 112.2 E(85289): 8.9e-26 Smith-Waterman score: 469; 98.8% identity (100.0% similar) in 80 aa overlap (1-80:1-80) 10 20 30 40 50 60 pF1KE2 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKVAGG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_001 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKAAGG 10 20 30 40 50 60 70 80 pF1KE2 ALQSTASLFVVSLSLLHLYS :::::::::::::::::::: NP_001 ALQSTASLFVVSLSLLHLYS 70 80 >>NP_001278668 (OMIM: 600074) signal transducer CD24 iso (129 aa) initn: 332 init1: 332 opt: 332 Z-score: 415.6 bits: 81.8 E(85289): 2.1e-16 Smith-Waterman score: 332; 96.6% identity (100.0% similar) in 58 aa overlap (23-80:72-129) 10 20 30 40 50 pF1KE2 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTN .::::::::::::::::::::::::::::: NP_001 SAASRVYGCTAPARETGGWAWETLAGAGAKKIYSSETTTGTSSNSSQSTSNSGLAPNPTN 50 60 70 80 90 100 60 70 80 pF1KE2 ATTKVAGGALQSTASLFVVSLSLLHLYS ::::.::::::::::::::::::::::: NP_001 ATTKAAGGALQSTASLFVVSLSLLHLYS 110 120 80 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:55:35 2016 done: Mon Nov 7 15:55:36 2016 Total Scan time: 3.590 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]