FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2240, 80 aa 1>>>pF1KE2240 80 - 80 aa - 80 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6313+/-0.000569; mu= 6.6855+/- 0.035 mean_var=64.0585+/-12.599, 0's: 0 Z-trim(113.0): 7 B-trim: 0 in 0/51 Lambda= 0.160245 statistics sampled from 13680 (13682) to 13680 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.42), width: 16 Scan time: 1.300 The best scores are: opt bits E(32554) CCDS75499.1 CD24 gene_id:100133941|Hs108|chr6 ( 80) 469 115.9 2.7e-27 CCDS78166.1 CD24 gene_id:100133941|Hs108|chr6 ( 129) 332 84.3 1.4e-17 >>CCDS75499.1 CD24 gene_id:100133941|Hs108|chr6 (80 aa) initn: 469 init1: 469 opt: 469 Z-score: 603.6 bits: 115.9 E(32554): 2.7e-27 Smith-Waterman score: 469; 98.8% identity (100.0% similar) in 80 aa overlap (1-80:1-80) 10 20 30 40 50 60 pF1KE2 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKVAGG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: CCDS75 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKAAGG 10 20 30 40 50 60 70 80 pF1KE2 ALQSTASLFVVSLSLLHLYS :::::::::::::::::::: CCDS75 ALQSTASLFVVSLSLLHLYS 70 80 >>CCDS78166.1 CD24 gene_id:100133941|Hs108|chr6 (129 aa) initn: 332 init1: 332 opt: 332 Z-score: 429.0 bits: 84.3 E(32554): 1.4e-17 Smith-Waterman score: 332; 96.6% identity (100.0% similar) in 58 aa overlap (23-80:72-129) 10 20 30 40 50 pF1KE2 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTN .::::::::::::::::::::::::::::: CCDS78 SAASRVYGCTAPARETGGWAWETLAGAGAKKIYSSETTTGTSSNSSQSTSNSGLAPNPTN 50 60 70 80 90 100 60 70 80 pF1KE2 ATTKVAGGALQSTASLFVVSLSLLHLYS ::::.::::::::::::::::::::::: CCDS78 ATTKAAGGALQSTASLFVVSLSLLHLYS 110 120 80 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:55:35 2016 done: Mon Nov 7 15:55:35 2016 Total Scan time: 1.300 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]