FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1087, 1239 aa 1>>>pF1KE1087 1239 - 1239 aa - 1239 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2744+/-0.000911; mu= 14.0626+/- 0.055 mean_var=143.3903+/-28.297, 0's: 0 Z-trim(110.6): 42 B-trim: 54 in 1/49 Lambda= 0.107106 statistics sampled from 11713 (11737) to 11713 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.361), width: 16 Scan time: 5.500 The best scores are: opt bits E(32554) CCDS10350.1 POLG gene_id:5428|Hs108|chr15 (1239) 8568 1336.6 0 >>CCDS10350.1 POLG gene_id:5428|Hs108|chr15 (1239 aa) initn: 8568 init1: 8568 opt: 8568 Z-score: 7158.1 bits: 1336.6 E(32554): 0 Smith-Waterman score: 8568; 100.0% identity (100.0% similar) in 1239 aa overlap (1-1239:1-1239) 10 20 30 40 50 60 pF1KE1 MSRLLWRKVAGATVGPGPVPAPGRWVSSSVPASDPSDGQRRRQQQQQQQQQQQQQPQQPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MSRLLWRKVAGATVGPGPVPAPGRWVSSSVPASDPSDGQRRRQQQQQQQQQQQQQPQQPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VLSSEGGQLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQPAVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VLSSEGGQLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQPAVPL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PDVELRLPPLYGDNLDQHFRLLAQKQSLPYLEAANLLLQAQLPPKPPAWAWAEGWTRYGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 PDVELRLPPLYGDNLDQHFRLLAQKQSLPYLEAANLLLQAQLPPKPPAWAWAEGWTRYGP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 EGEAVPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSQRLVEERYSWTSQLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 EGEAVPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSQRLVEERYSWTSQLS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 PADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 ISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 ISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 RLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 RLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPH 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 PVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLMDLANDACQLLSGERYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 PVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLMDLANDACQLLSGERYK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 EDPWLWDLEWDLQEFKQKKAKKVKKEPATASKLPIEGAGAPGDPMDQEDLGPCSEEEEFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 EDPWLWDLEWDLQEFKQKKAKKVKKEPATASKLPIEGAGAPGDPMDQEDLGPCSEEEEFQ 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 QDVMARACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRLDDPAWTPGPSLLSLQMRVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 QDVMARACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRLDDPAWTPGPSLLSLQMRVTP 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE1 KLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKLPTGTTLESAGVVCPYRAIESLYRKHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 KLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKLPTGTTLESAGVVCPYRAIESLYRKHC 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE1 LEQGKQQLMPQEAGLAEEFLLTDNSAIWQTVEELDYLEVEAEAKMENLRAAVPGQPLALT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LEQGKQQLMPQEAGLAEEFLLTDNSAIWQTVEELDYLEVEAEAKMENLRAAVPGQPLALT 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE1 ARGGPKDTQPSYHHGNGPYNDVDIPGCWFFKLPHKDGNSCNVGSPFAKDFLPKMEDGTLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 ARGGPKDTQPSYHHGNGPYNDVDIPGCWFFKLPHKDGNSCNVGSPFAKDFLPKMEDGTLQ 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE1 AGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 AGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAI 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE1 LPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 850 860 870 880 890 900 910 920 930 940 950 960 pF1KE1 VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KE1 FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KE1 SLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 SLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCIS 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KE1 RALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 RALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYL 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KE1 VREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDRCLRKEVTMDCKTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDRCLRKEVTMDCKTP 1150 1160 1170 1180 1190 1200 1210 1220 1230 pF1KE1 SNPTGMERRYGIPQGEALDIYQIIELTKGSLEKRSQPGP ::::::::::::::::::::::::::::::::::::::: CCDS10 SNPTGMERRYGIPQGEALDIYQIIELTKGSLEKRSQPGP 1210 1220 1230 1239 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:15:46 2016 done: Sun Nov 6 20:15:47 2016 Total Scan time: 5.500 Total Display time: 0.070 Function used was FASTA [36.3.4 Apr, 2011]