Result of FASTA (omim) for
pFN21AB5422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5422, 224 aa
1>>>pF1KB5422 224 - 224 aa - 224 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7532+/-0.00026; mu= 13.9687+/- 0.016
mean_var=102.1951+/-21.261, 0's: 0 Z-trim(121.8): 41 B-trim: 1277 in 1/53
Lambda= 0.126870
statistics sampled from 38976 (39026) to 38976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.458), width: 16
Scan time: 6.900
The best scores are: opt bits E(85289)
NP_904319 (OMIM: 609111) F-box only protein 44 iso ( 224) 1583 299.1 4e-81
XP_016858333 (OMIM: 609111) PREDICTED: F-box only ( 224) 1583 299.1 4e-81
NP_001291719 (OMIM: 609111) F-box only protein 44 ( 224) 1583 299.1 4e-81
NP_904320 (OMIM: 609111) F-box only protein 44 iso ( 224) 1583 299.1 4e-81
XP_016858332 (OMIM: 609111) PREDICTED: F-box only ( 255) 874 169.3 5.1e-42
NP_001291720 (OMIM: 609111) F-box only protein 44 ( 255) 874 169.3 5.1e-42
XP_006711108 (OMIM: 609111) PREDICTED: F-box only ( 255) 874 169.3 5.1e-42
NP_149438 (OMIM: 609111) F-box only protein 44 iso ( 255) 874 169.3 5.1e-42
NP_001014765 (OMIM: 609111) F-box only protein 44 ( 255) 874 169.3 5.1e-42
XP_011540737 (OMIM: 609111) PREDICTED: F-box only ( 256) 866 167.9 1.4e-41
XP_016858331 (OMIM: 609111) PREDICTED: F-box only ( 256) 866 167.9 1.4e-41
XP_005263594 (OMIM: 609111) PREDICTED: F-box only ( 256) 866 167.9 1.4e-41
XP_006711106 (OMIM: 609111) PREDICTED: F-box only ( 256) 866 167.9 1.4e-41
XP_005263593 (OMIM: 609111) PREDICTED: F-box only ( 256) 866 167.9 1.4e-41
NP_001317284 (OMIM: 609111) F-box only protein 44 ( 256) 866 167.9 1.4e-41
XP_005263506 (OMIM: 605647) PREDICTED: F-box only ( 293) 692 136.1 6.1e-32
XP_006710634 (OMIM: 605647) PREDICTED: F-box only ( 293) 692 136.1 6.1e-32
XP_011539534 (OMIM: 605647) PREDICTED: F-box only ( 293) 692 136.1 6.1e-32
NP_060908 (OMIM: 605647) F-box only protein 6 [Hom ( 293) 692 136.1 6.1e-32
XP_016856496 (OMIM: 605647) PREDICTED: F-box only ( 293) 692 136.1 6.1e-32
XP_005263505 (OMIM: 605647) PREDICTED: F-box only ( 293) 692 136.1 6.1e-32
XP_005263508 (OMIM: 605647) PREDICTED: F-box only ( 293) 692 136.1 6.1e-32
NP_036300 (OMIM: 607112) F-box only protein 2 [Hom ( 296) 367 76.6 4.9e-14
NP_079183 (OMIM: 609094) F-box only protein 17 iso ( 278) 164 39.4 0.0072
NP_680474 (OMIM: 609094) F-box only protein 17 iso ( 287) 164 39.4 0.0074
>>NP_904319 (OMIM: 609111) F-box only protein 44 isoform (224 aa)
initn: 1583 init1: 1583 opt: 1583 Z-score: 1577.4 bits: 299.1 E(85289): 4e-81
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
130 140 150 160 170 180
190 200 210 220
pF1KB5 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
::::::::::::::::::::::::::::::::::::::::::::
NP_904 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
190 200 210 220
>>XP_016858333 (OMIM: 609111) PREDICTED: F-box only prot (224 aa)
initn: 1583 init1: 1583 opt: 1583 Z-score: 1577.4 bits: 299.1 E(85289): 4e-81
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
130 140 150 160 170 180
190 200 210 220
pF1KB5 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
190 200 210 220
>>NP_001291719 (OMIM: 609111) F-box only protein 44 isof (224 aa)
initn: 1583 init1: 1583 opt: 1583 Z-score: 1577.4 bits: 299.1 E(85289): 4e-81
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
130 140 150 160 170 180
190 200 210 220
pF1KB5 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
190 200 210 220
>>NP_904320 (OMIM: 609111) F-box only protein 44 isoform (224 aa)
initn: 1583 init1: 1583 opt: 1583 Z-score: 1577.4 bits: 299.1 E(85289): 4e-81
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
130 140 150 160 170 180
190 200 210 220
pF1KB5 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
::::::::::::::::::::::::::::::::::::::::::::
NP_904 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
190 200 210 220
>>XP_016858332 (OMIM: 609111) PREDICTED: F-box only prot (255 aa)
initn: 874 init1: 874 opt: 874 Z-score: 875.3 bits: 169.3 E(85289): 5.1e-42
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
::.
XP_016 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
130 140 150 160 170 180
>>NP_001291720 (OMIM: 609111) F-box only protein 44 isof (255 aa)
initn: 874 init1: 874 opt: 874 Z-score: 875.3 bits: 169.3 E(85289): 5.1e-42
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
::.
NP_001 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
130 140 150 160 170 180
>>XP_006711108 (OMIM: 609111) PREDICTED: F-box only prot (255 aa)
initn: 874 init1: 874 opt: 874 Z-score: 875.3 bits: 169.3 E(85289): 5.1e-42
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
::.
XP_006 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
130 140 150 160 170 180
>>NP_149438 (OMIM: 609111) F-box only protein 44 isoform (255 aa)
initn: 874 init1: 874 opt: 874 Z-score: 875.3 bits: 169.3 E(85289): 5.1e-42
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
::.
NP_149 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
130 140 150 160 170 180
>>NP_001014765 (OMIM: 609111) F-box only protein 44 isof (255 aa)
initn: 874 init1: 874 opt: 874 Z-score: 875.3 bits: 169.3 E(85289): 5.1e-42
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
::.
NP_001 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
130 140 150 160 170 180
>>XP_011540737 (OMIM: 609111) PREDICTED: F-box only prot (256 aa)
initn: 1569 init1: 866 opt: 866 Z-score: 867.4 bits: 167.9 E(85289): 1.4e-41
Smith-Waterman score: 1509; 87.5% identity (87.5% similar) in 256 aa overlap (1-224:1-256)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140
pF1KB5 Q--------------------------------VRSQARLRVQVPAVRSAPVVRARASGD
: :::::::::::::::::::::::::::
XP_011 QHLPQVPGGGPQGRRVLGGADGYHTAGHRGQGLVRSQARLRVQVPAVRSAPVVRARASGD
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB5 LPARPGDHPAEERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPARPGDHPAEERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHH
190 200 210 220 230 240
210 220
pF1KB5 RAPAALTPPEPPSAEP
::::::::::::::::
XP_011 RAPAALTPPEPPSAEP
250
224 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:45:28 2016 done: Sat Nov 5 12:45:29 2016
Total Scan time: 6.900 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]