Result of FASTA (ccds) for
pFN21AB5422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5422, 224 aa
1>>>pF1KB5422 224 - 224 aa - 224 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2449+/-0.000593; mu= 11.0408+/- 0.036
mean_var=97.8707+/-19.715, 0's: 0 Z-trim(114.5): 14 B-trim: 0 in 0/53
Lambda= 0.129643
statistics sampled from 15031 (15045) to 15031 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.462), width: 16
Scan time: 2.400
The best scores are: opt bits E(32554)
CCDS131.1 FBXO44 gene_id:93611|Hs108|chr1 ( 224) 1583 305.3 2.1e-83
CCDS132.1 FBXO44 gene_id:93611|Hs108|chr1 ( 255) 874 172.7 1.9e-43
CCDS81261.1 FBXO44 gene_id:93611|Hs108|chr1 ( 256) 866 171.2 5.5e-43
CCDS133.1 FBXO6 gene_id:26270|Hs108|chr1 ( 293) 692 138.7 3.8e-33
CCDS130.1 FBXO2 gene_id:26232|Hs108|chr1 ( 296) 367 77.9 7.7e-15
>>CCDS131.1 FBXO44 gene_id:93611|Hs108|chr1 (224 aa)
initn: 1583 init1: 1583 opt: 1583 Z-score: 1610.8 bits: 305.3 E(32554): 2.1e-83
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
130 140 150 160 170 180
190 200 210 220
pF1KB5 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
190 200 210 220
>>CCDS132.1 FBXO44 gene_id:93611|Hs108|chr1 (255 aa)
initn: 874 init1: 874 opt: 874 Z-score: 893.3 bits: 172.7 E(32554): 1.9e-43
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
::.
CCDS13 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
130 140 150 160 170 180
>>CCDS81261.1 FBXO44 gene_id:93611|Hs108|chr1 (256 aa)
initn: 1569 init1: 866 opt: 866 Z-score: 885.2 bits: 171.2 E(32554): 5.5e-43
Smith-Waterman score: 1509; 87.5% identity (87.5% similar) in 256 aa overlap (1-224:1-256)
10 20 30 40 50 60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
70 80 90 100 110 120
130 140
pF1KB5 Q--------------------------------VRSQARLRVQVPAVRSAPVVRARASGD
: :::::::::::::::::::::::::::
CCDS81 QHLPQVPGGGPQGRRVLGGADGYHTAGHRGQGLVRSQARLRVQVPAVRSAPVVRARASGD
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB5 LPARPGDHPAEERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LPARPGDHPAEERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHH
190 200 210 220 230 240
210 220
pF1KB5 RAPAALTPPEPPSAEP
::::::::::::::::
CCDS81 RAPAALTPPEPPSAEP
250
>>CCDS133.1 FBXO6 gene_id:26270|Hs108|chr1 (293 aa)
initn: 686 init1: 686 opt: 692 Z-score: 708.5 bits: 138.7 E(32554): 3.8e-33
Smith-Waterman score: 692; 78.7% identity (91.0% similar) in 122 aa overlap (2-123:9-130)
10 20 30 40 50
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLR
:. .::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS13 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ
:::::.:::::::::::::::::::::::.:::::: . :..: ::::.::::.: .
CCDS13 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 RKEFPNDQVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQ
.::. .:.
CCDS13 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
130 140 150 160 170 180
>>CCDS130.1 FBXO2 gene_id:26232|Hs108|chr1 (296 aa)
initn: 364 init1: 190 opt: 367 Z-score: 379.9 bits: 77.9 E(32554): 7.7e-15
Smith-Waterman score: 367; 40.5% identity (66.2% similar) in 148 aa overlap (2-147:43-188)
10 20 30
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCR
:.. ..:::: .::.... .:: .:. ::
CCDS13 PEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQACR
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB5 LVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVAD-WKIFYFLRSLHRNLLHNPCAEEG
::: :..:.: . :: :: .::.. : . : :. :::: . .::::.:::.::
CCDS13 LVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEED
80 90 100 110 120 130
100 110 120 130 140
pF1KB5 FEFWSLDV-NGGDEWKVEDLSRDQRKEFPNDQVRSQARLRVQVPAVRSAPVVRARASGDL
.: : :: .::: :.::.: :. :: .:. . . . :.: :. .: :
CCDS13 LEGWC-DVEHGGDGWRVEELPGDSGVEFTHDE-SVKKYFASSFEWCRKAQVIDLQAEGYW
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB5 PARPGDHPAEERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHHR
CCDS13 EELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGW
200 210 220 230 240 250
224 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:45:27 2016 done: Sat Nov 5 12:45:27 2016
Total Scan time: 2.400 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]