FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7604, 355 aa
  1>>>pF1KB7604 355 - 355 aa - 355 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.9131+/-0.00107; mu= -18.8129+/- 0.064
 mean_var=746.0284+/-167.965, 0's: 0 Z-trim(119.2): 319  B-trim: 1003 in 1/53
 Lambda= 0.046957
 statistics sampled from 19947 (20424) to 19947 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.858), E-opt: 0.2 (0.627), width:  16
 Scan time:  3.290

The best scores are:                                      opt bits E(32554)
CCDS12343.1 KLF2 gene_id:10365|Hs108|chr19         ( 355) 2606 190.7 1.6e-48
CCDS6770.2 KLF4 gene_id:9314|Hs108|chr9            ( 479)  837 71.0 2.3e-12


>>CCDS12343.1 KLF2 gene_id:10365|Hs108|chr19              (355 aa)
 initn: 2606 init1: 2606 opt: 2606  Z-score: 984.7  bits: 190.7 E(32554): 1.6e-48
Smith-Waterman score: 2606; 99.7% identity (99.7% similar) in 355 aa overlap (1-355:1-355)

               10        20        30        40        50        60
pF1KB7 MALSEPILPSFSTFASPCRERGLQERWPRAEPESGGTDDDLNSVLDFILSMGLDGLGAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MALSEPILPSFSTFASPCRERGLQERWPRAEPESGGTDDDLNSVLDFILSMGLDGLGAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 APEPPPPPPPPAFYYPEPGAPPPYSAPAGGLVSELLRPELDAPPGPALHGRFLLAPPGRL
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS12 APEPPPPPPPPAFYYPEPGAPPPYSAPAGGLVSELLRPELDAPLGPALHGRFLLAPPGRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VKAEPPEADGGGGYGCAPGLTRGPRGLKREGAPGPAASCMRGPGGRPPPPPDTPPLSPDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VKAEPPEADGGGGYGCAPGLTRGPRGLKREGAPGPAASCMRGPGGRPPPPPDTPPLSPDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PARLPAPGPRASFPPPFGGPGFGAPGPGLHYAPPAPPAFGLFDDAAAAAAALGLAPPAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PARLPAPGPRASFPPPFGGPGFGAPGPGLHYAPPAPPAFGLFDDAAAAAAALGLAPPAAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GLLTPPASPLELLEAKPKRGRRSWPRKRTATHTCSYAGCGKTYTKSSHLKAHLRTHTGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GLLTPPASPLELLEAKPKRGRRSWPRKRTATHTCSYAGCGKTYTKSSHLKAHLRTHTGEK
              250       260       270       280       290       300

              310       320       330       340       350     
pF1KB7 PYHCNWDGCGWKFARSDELTRHYRKHTGHRPFQCHLCDRAFSRSDHLALHMKRHM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PYHCNWDGCGWKFARSDELTRHYRKHTGHRPFQCHLCDRAFSRSDHLALHMKRHM
              310       320       330       340       350     

>>CCDS6770.2 KLF4 gene_id:9314|Hs108|chr9                 (479 aa)
 initn: 865 init1: 729 opt: 837  Z-score: 335.5  bits: 71.0 E(32554): 2.3e-12
Smith-Waterman score: 906; 45.0% identity (58.9% similar) in 380 aa overlap (5-354:118-478)

                                         10        20        30    
pF1KB7                           MALSEPILPSFSTFASPCRERGLQERWPRAEPES
                                     : .  . :. ::     . .   : . : .
CCDS67 LAPLPRRETEEFNDLLDLDFILSNSLTHPPESVAATVSSSASASSSSSPSSSGPASAPST
        90       100       110       120       130       140       

           40        50        60        70        80        90    
pF1KB7 GGTDDDLNSVLDFILSMGLDGLGAEAAPEPPPPPPPPAFYYPEPGAPPPYSAPAGGLVSE
        .    . .  :  .. :  : :   . :  :::  : :   . .      .:.::.:.:
CCDS67 CSFTYPIRAGNDPGVAPGGTGGGLLYGRESAPPPTAP-FNLADIND----VSPSGGFVAE
       150       160       170       180        190           200  

          100                110                 120       130     
pF1KB7 LLRPELDA---------PPGPALHGRFLL----APPGR------LVKAEPPEADGGGGYG
       :::::::          ::: .: :.:.:    . ::       ....     ::.    
CCDS67 LLRPELDPVYIPPQQPQPPGGGLMGKFVLKASLSAPGSEYGSPSVISVSKGSPDGSHPVV
            210       220       230       240       250       260  

         140          150       160             170       180      
pF1KB7 CAPGLTRGPRG---LKREGAPGPAASCMR---GP---GGRPPPPPDTPPLSPDGPARL-P
        ::     ::    .:.:..    .:: .   ::   .:. :   : : :. . :.:  :
CCDS67 VAPYNGGPPRTCPKIKQEAV----SSCTHLGAGPPLSNGHRPAAHDFP-LGRQLPSRTTP
            270       280           290       300        310       

         190       200       210        220       230       240    
pF1KB7 APGPRASFPPPFGGPGFGAPGPGLHYAP-PAPPAFGLFDDAAAAAAALGLAPPAARGLLT
       . : .  .      :..  : ::.:  : :  :.: : :.    .      ::     : 
CCDS67 TLGLEEVLSSRDCHPALPLP-PGFHPHPGPNYPSF-LPDQMQPQV------PPLHYQELM
       320       330        340       350        360               

          250       260       270       280       290       300    
pF1KB7 PPASPLELLEAKPKRGRRSWPRKRTATHTCSYAGCGKTYTKSSHLKAHLRTHTGEKPYHC
       ::.: .   : :::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS67 PPGSCMPE-EPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC
     370        380       390       400       410       420        

          310       320       330       340       350     
pF1KB7 NWDGCGWKFARSDELTRHYRKHTGHRPFQCHLCDRAFSRSDHLALHMKRHM
       .:::::::::::::::::::::::::::::. :::::::::::::::::: 
CCDS67 DWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF
      430       440       450       460       470         




355 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:36:50 2016 done: Mon Nov  7 15:36:51 2016
 Total Scan time:  3.290 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]