FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1578, 64 aa 1>>>pF1KE1578 64 - 64 aa - 64 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5564+/-0.000225; mu= 10.7937+/- 0.014 mean_var=56.1651+/-10.986, 0's: 0 Z-trim(124.6): 19 B-trim: 67 in 1/53 Lambda= 0.171136 statistics sampled from 46550 (46569) to 46550 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.879), E-opt: 0.2 (0.546), width: 16 Scan time: 3.340 The best scores are: opt bits E(85289) NP_004933 (OMIM: 602215) beta-defensin 4A precurso ( 64) 476 123.9 1.8e-29 NP_061131 (OMIM: 606611) beta-defensin 103 precurs ( 67) 187 52.5 5.6e-08 NP_005209 (OMIM: 602056) beta-defensin 1 prepropro ( 68) 123 36.7 0.0032 >>NP_004933 (OMIM: 602215) beta-defensin 4A precursor [H (64 aa) initn: 476 init1: 476 opt: 476 Z-score: 650.2 bits: 123.9 E(85289): 1.8e-29 Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64) 10 20 30 40 50 60 pF1KE1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC 10 20 30 40 50 60 pF1KE1 CKKP :::: NP_004 CKKP >>NP_061131 (OMIM: 606611) beta-defensin 103 precursor [ (67 aa) initn: 217 init1: 111 opt: 187 Z-score: 264.3 bits: 52.5 E(85289): 5.6e-08 Smith-Waterman score: 187; 42.4% identity (65.2% similar) in 66 aa overlap (1-63:1-65) 10 20 30 40 50 pF1KE1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVT---CLKSGAICHPVFCPRRYKQIGTCGLPG ::. ::::..::.::.:.:: ::: . . : :. : . : . .::: :. : NP_061 MRIHYLLFALLFLFLVPVPG-HGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG 10 20 30 40 50 60 pF1KE1 TKCCKKP :::.. NP_061 RKCCRRKK 60 >>NP_005209 (OMIM: 602056) beta-defensin 1 preproprotein (68 aa) initn: 121 init1: 99 opt: 123 Z-score: 178.8 bits: 36.7 E(85289): 0.0032 Smith-Waterman score: 123; 39.7% identity (54.4% similar) in 68 aa overlap (1-62:1-68) 10 20 30 40 50 pF1KE1 MRVLYLLFSFLFIFL--MPLPGVF-GGIG---DPVTCLKSGAICHPVFCPRRYKQIGTCG ::. :::. : ..: : : : :.: : .:..::. : :: : ::: NP_005 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY 10 20 30 40 50 60 60 pF1KE1 LPGTKCCKKP .:::: NP_005 RGKAKCCK 64 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:33:17 2016 done: Mon Nov 7 15:33:18 2016 Total Scan time: 3.340 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]