FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1578, 64 aa
  1>>>pF1KE1578 64 - 64 aa - 64 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3366+/-0.000448; mu= 12.2869+/- 0.027
 mean_var=59.9767+/-11.730, 0's: 0 Z-trim(118.0): 14  B-trim: 124 in 2/50
 Lambda= 0.165609
 statistics sampled from 18803 (18817) to 18803 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.894), E-opt: 0.2 (0.578), width:  16
 Scan time:  1.260

The best scores are:                                      opt bits E(32554)
CCDS5971.1 DEFB4A gene_id:1673|Hs108|chr8          (  64)  476 120.1 9.3e-29
CCDS55193.1 DEFB4B gene_id:100289462|Hs108|chr8    (  64)  476 120.1 9.3e-29


>>CCDS5971.1 DEFB4A gene_id:1673|Hs108|chr8               (64 aa)
 initn: 476 init1: 476 opt: 476  Z-score: 629.8  bits: 120.1 E(32554): 9.3e-29
Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)

               10        20        30        40        50        60
pF1KE1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC
               10        20        30        40        50        60

           
pF1KE1 CKKP
       ::::
CCDS59 CKKP
           

>>CCDS55193.1 DEFB4B gene_id:100289462|Hs108|chr8         (64 aa)
 initn: 476 init1: 476 opt: 476  Z-score: 629.8  bits: 120.1 E(32554): 9.3e-29
Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)

               10        20        30        40        50        60
pF1KE1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC
               10        20        30        40        50        60

           
pF1KE1 CKKP
       ::::
CCDS55 CKKP
           




64 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:33:16 2016 done: Mon Nov  7 15:33:17 2016
 Total Scan time:  1.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]