FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1606, 112 aa 1>>>pF1KE1606 112 - 112 aa - 112 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6917+/-0.000254; mu= 13.6083+/- 0.016 mean_var=60.4873+/-11.808, 0's: 0 Z-trim(121.6): 19 B-trim: 162 in 1/52 Lambda= 0.164908 statistics sampled from 38486 (38509) to 38486 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.452), width: 16 Scan time: 5.010 The best scores are: opt bits E(85289) NP_006655 (OMIM: 604833) C-C motif chemokine 27 pr ( 112) 777 191.9 1.8e-49 NP_001288803 (OMIM: 605240) C-C motif chemokine 28 ( 127) 219 59.2 1.8e-09 NP_001288802 (OMIM: 605240) C-C motif chemokine 28 ( 127) 219 59.2 1.8e-09 NP_683513 (OMIM: 605240) C-C motif chemokine 28 is ( 127) 219 59.2 1.8e-09 NP_001288804 (OMIM: 605240) C-C motif chemokine 28 ( 80) 159 44.8 2.5e-05 >>NP_006655 (OMIM: 604833) C-C motif chemokine 27 precur (112 aa) initn: 777 init1: 777 opt: 777 Z-score: 1009.3 bits: 191.9 E(85289): 1.8e-49 Smith-Waterman score: 777; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112) 10 20 30 40 50 60 pF1KE1 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG 70 80 90 100 110 >>NP_001288803 (OMIM: 605240) C-C motif chemokine 28 iso (127 aa) initn: 220 init1: 173 opt: 219 Z-score: 291.1 bits: 59.2 E(85289): 1.8e-09 Smith-Waterman score: 219; 39.7% identity (76.7% similar) in 73 aa overlap (26-98:23-94) 10 20 30 40 50 60 pF1KE1 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG .:: ...:::.. .. .: .::..: . ..:.::: NP_001 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHH-ISRRLLERVNMCRIQRADG 10 20 30 40 50 70 80 90 100 110 pF1KE1 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG :: : : .::. .: ::. :.: ...::.. : : .: NP_001 DCDLAAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQG 60 70 80 90 100 110 NP_001 KHETYGHKTPY 120 >>NP_001288802 (OMIM: 605240) C-C motif chemokine 28 iso (127 aa) initn: 220 init1: 173 opt: 219 Z-score: 291.1 bits: 59.2 E(85289): 1.8e-09 Smith-Waterman score: 219; 39.7% identity (76.7% similar) in 73 aa overlap (26-98:23-94) 10 20 30 40 50 60 pF1KE1 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG .:: ...:::.. .. .: .::..: . ..:.::: NP_001 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHH-ISRRLLERVNMCRIQRADG 10 20 30 40 50 70 80 90 100 110 pF1KE1 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG :: : : .::. .: ::. :.: ...::.. : : .: NP_001 DCDLAAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQG 60 70 80 90 100 110 NP_001 KHETYGHKTPY 120 >>NP_683513 (OMIM: 605240) C-C motif chemokine 28 isofor (127 aa) initn: 220 init1: 173 opt: 219 Z-score: 291.1 bits: 59.2 E(85289): 1.8e-09 Smith-Waterman score: 219; 39.7% identity (76.7% similar) in 73 aa overlap (26-98:23-94) 10 20 30 40 50 60 pF1KE1 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG .:: ...:::.. .. .: .::..: . ..:.::: NP_683 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHH-ISRRLLERVNMCRIQRADG 10 20 30 40 50 70 80 90 100 110 pF1KE1 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG :: : : .::. .: ::. :.: ...::.. : : .: NP_683 DCDLAAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQG 60 70 80 90 100 110 NP_683 KHETYGHKTPY 120 >>NP_001288804 (OMIM: 605240) C-C motif chemokine 28 iso (80 aa) initn: 161 init1: 150 opt: 159 Z-score: 216.7 bits: 44.8 E(85289): 2.5e-05 Smith-Waterman score: 159; 45.5% identity (75.0% similar) in 44 aa overlap (55-98:4-47) 30 40 50 60 70 80 pF1KE1 FLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADGDCHLQAFVLHLAQRSICIHPQNPS .:.::::: : : .::. .: ::. :.: . NP_001 MCRIQRADGDCDLAAVILHVKRRRICVSPHNHT 10 20 30 90 100 110 pF1KE1 LSQWFEHQERKLHGTLPKLNFGMLRKMG ..::.. : : .: NP_001 VKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHETYGHKTPY 40 50 60 70 80 112 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:31:02 2016 done: Mon Nov 7 15:31:03 2016 Total Scan time: 5.010 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]