FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1583, 89 aa
  1>>>pF1KE1583 89 - 89 aa - 89 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8882+/-0.000369; mu= 10.2652+/- 0.023
 mean_var=50.5078+/-10.566, 0's: 0 Z-trim(112.6): 5  B-trim: 872 in 2/47
 Lambda= 0.180466
 statistics sampled from 21532 (21537) to 21532 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.253), width:  16
 Scan time:  3.640

The best scores are:                                      opt bits E(85289)
NP_542408 (OMIM: 608942) dynein light chain 2, cyt (  89)  600 163.6 3.8e-41
NP_003737 (OMIM: 601562) dynein light chain 1, cyt (  89)  568 155.3 1.2e-38
NP_001032583 (OMIM: 601562) dynein light chain 1,  (  89)  568 155.3 1.2e-38
NP_001032584 (OMIM: 601562) dynein light chain 1,  (  89)  568 155.3 1.2e-38
NP_005731 (OMIM: 610565,616059) dynein light chain ( 105)  204 60.5 4.8e-10


>>NP_542408 (OMIM: 608942) dynein light chain 2, cytopla  (89 aa)
 initn: 600 init1: 600 opt: 600  Z-score: 859.7  bits: 163.6 E(85289): 3.8e-41
Smith-Waterman score: 600; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
NP_542 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>NP_003737 (OMIM: 601562) dynein light chain 1, cytopla  (89 aa)
 initn: 568 init1: 568 opt: 568  Z-score: 814.6  bits: 155.3 E(85289): 1.2e-38
Smith-Waterman score: 568; 93.3% identity (98.9% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
       : :::::::::::::.::::.:.:::::.:::::::::::.:::::::::::::::::::
NP_003 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
NP_003 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>NP_001032583 (OMIM: 601562) dynein light chain 1, cyto  (89 aa)
 initn: 568 init1: 568 opt: 568  Z-score: 814.6  bits: 155.3 E(85289): 1.2e-38
Smith-Waterman score: 568; 93.3% identity (98.9% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
       : :::::::::::::.::::.:.:::::.:::::::::::.:::::::::::::::::::
NP_001 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
NP_001 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>NP_001032584 (OMIM: 601562) dynein light chain 1, cyto  (89 aa)
 initn: 568 init1: 568 opt: 568  Z-score: 814.6  bits: 155.3 E(85289): 1.2e-38
Smith-Waterman score: 568; 93.3% identity (98.9% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
       : :::::::::::::.::::.:.:::::.:::::::::::.:::::::::::::::::::
NP_001 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
NP_001 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>NP_005731 (OMIM: 610565,616059) dynein light chain 4,   (105 aa)
 initn: 225 init1: 148 opt: 204  Z-score: 301.3  bits: 60.5 E(85289): 4.8e-10
Smith-Waterman score: 204; 33.7% identity (78.3% similar) in 83 aa overlap (7-87:21-103)

                             10        20        30         40     
pF1KE1               MSDRKAVIKNADMSEDMQQDAVDCATQAMEKY-NIEKDIAAYIKKE
                           .....:: :.:. ....  . : ::. : ... : .::. 
NP_005 MGETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET
               10        20        30        40        50        60

          50        60        70         80         
pF1KE1 FDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG-QVAILLFKSG
       .:::.. .:: ..:..::  .:::.:...:.:.:  .:. ..:  
NP_005 MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS
               70        80        90       100     




89 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:30:35 2016 done: Mon Nov  7 15:30:35 2016
 Total Scan time:  3.640 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]