FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1732, 240 aa 1>>>pF1KE1732 240 - 240 aa - 240 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.0956+/-0.000308; mu= 4.0801+/- 0.019 mean_var=184.4262+/-37.442, 0's: 0 Z-trim(123.2): 4 B-trim: 861 in 2/53 Lambda= 0.094442 statistics sampled from 42640 (42646) to 42640 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.5), width: 16 Scan time: 7.610 The best scores are: opt bits E(85289) NP_005139 (OMIM: 604011,615518) protein unc-119 ho ( 240) 1661 237.4 1.7e-62 NP_473376 (OMIM: 604011,615518) protein unc-119 ho ( 220) 1408 202.9 3.9e-52 NP_001317095 (OMIM: 604011,615518) protein unc-119 ( 145) 1001 147.3 1.4e-35 XP_011523761 (OMIM: 604011,615518) PREDICTED: prot ( 126) 764 114.9 6.6e-26 >>NP_005139 (OMIM: 604011,615518) protein unc-119 homolo (240 aa) initn: 1661 init1: 1661 opt: 1661 Z-score: 1242.8 bits: 237.4 E(85289): 1.7e-62 Smith-Waterman score: 1661; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240) 10 20 30 40 50 60 pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP 190 200 210 220 230 240 >>NP_473376 (OMIM: 604011,615518) protein unc-119 homolo (220 aa) initn: 1408 init1: 1408 opt: 1408 Z-score: 1057.0 bits: 202.9 E(85289): 3.9e-52 Smith-Waterman score: 1408; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203) 10 20 30 40 50 60 pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_473 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_473 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_473 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP ::::::::::::::::::::::: NP_473 FCIPSSKNTCEHIYDFPPLSEELSARAGSSGSGEVGASRD 190 200 210 220 >>NP_001317095 (OMIM: 604011,615518) protein unc-119 hom (145 aa) initn: 1001 init1: 1001 opt: 1001 Z-score: 759.8 bits: 147.3 E(85289): 1.4e-35 Smith-Waterman score: 1001; 100.0% identity (100.0% similar) in 145 aa overlap (96-240:1-145) 70 80 90 100 110 120 pF1KE1 LGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNA :::::::::::::::::::::::::::::: NP_001 MDSGTVLFEIKKPPVSERLPINRRDLDPNA 10 20 30 130 140 150 160 170 180 pF1KE1 GRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPS 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE1 SKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP 100 110 120 130 140 >>XP_011523761 (OMIM: 604011,615518) PREDICTED: protein (126 aa) initn: 764 init1: 764 opt: 764 Z-score: 586.1 bits: 114.9 E(85289): 6.6e-26 Smith-Waterman score: 764; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111) 10 20 30 40 50 60 pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD ::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSGWSSQWETS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG XP_011 LSTTSA 240 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:28:53 2016 done: Mon Nov 7 15:28:54 2016 Total Scan time: 7.610 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]