FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1732, 240 aa 1>>>pF1KE1732 240 - 240 aa - 240 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7620+/-0.000813; mu= 6.5049+/- 0.050 mean_var=190.2749+/-37.575, 0's: 0 Z-trim(115.8): 5 B-trim: 0 in 0/52 Lambda= 0.092979 statistics sampled from 16363 (16367) to 16363 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.503), width: 16 Scan time: 2.590 The best scores are: opt bits E(32554) CCDS11233.1 UNC119 gene_id:9094|Hs108|chr17 ( 240) 1661 233.9 7.5e-62 CCDS11234.1 UNC119 gene_id:9094|Hs108|chr17 ( 220) 1408 199.9 1.2e-51 CCDS82094.1 UNC119 gene_id:9094|Hs108|chr17 ( 145) 1001 145.1 2.3e-35 CCDS31914.1 UNC119B gene_id:84747|Hs108|chr12 ( 251) 898 131.5 5e-31 >>CCDS11233.1 UNC119 gene_id:9094|Hs108|chr17 (240 aa) initn: 1661 init1: 1661 opt: 1661 Z-score: 1224.0 bits: 233.9 E(32554): 7.5e-62 Smith-Waterman score: 1661; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240) 10 20 30 40 50 60 pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP 190 200 210 220 230 240 >>CCDS11234.1 UNC119 gene_id:9094|Hs108|chr17 (220 aa) initn: 1408 init1: 1408 opt: 1408 Z-score: 1041.0 bits: 199.9 E(32554): 1.2e-51 Smith-Waterman score: 1408; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203) 10 20 30 40 50 60 pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP ::::::::::::::::::::::: CCDS11 FCIPSSKNTCEHIYDFPPLSEELSARAGSSGSGEVGASRD 190 200 210 220 >>CCDS82094.1 UNC119 gene_id:9094|Hs108|chr17 (145 aa) initn: 1001 init1: 1001 opt: 1001 Z-score: 748.3 bits: 145.1 E(32554): 2.3e-35 Smith-Waterman score: 1001; 100.0% identity (100.0% similar) in 145 aa overlap (96-240:1-145) 70 80 90 100 110 120 pF1KE1 LGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNA :::::::::::::::::::::::::::::: CCDS82 MDSGTVLFEIKKPPVSERLPINRRDLDPNA 10 20 30 130 140 150 160 170 180 pF1KE1 GRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 GRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPS 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE1 SKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 SKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP 100 110 120 130 140 >>CCDS31914.1 UNC119B gene_id:84747|Hs108|chr12 (251 aa) initn: 913 init1: 664 opt: 898 Z-score: 670.6 bits: 131.5 E(32554): 5e-31 Smith-Waterman score: 899; 58.3% identity (77.7% similar) in 247 aa overlap (6-238:3-249) 10 20 30 40 pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPA-----ESESGSESEP----DAGPGP-- :.. ..:. :: ::.: .. . : . .. .. : : : : CCDS31 MSGSNPKAAAAASAAGPGGLVAGKEEKKKAGGGVLNRLKARRQAPHHAADDGVGAAV 10 20 30 40 50 50 60 70 80 90 100 pF1KE1 RPGPLQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPP : . : :: :: :.:.: .:::.::.:::.:::.::::::...::::::: :: CCDS31 TEQELLALDTIRPEHVLRLSRVTENYLCKPEDNIYSIDFTRFKIRDLETGTVLFEIAKPC 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 VSERLPINRR---DLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHY ::.. ... :.: .::::::::::::::::: ::::::::::::::.::::::::: CCDS31 VSDQEEDEEEGGGDVDISAGRFVRYQFTPAFLRLRTVGATVEFTVGDKPVSNFRMIERHY 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE1 FRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRL ::..:::.::: ::::::::.:::::::.:: :::..: ::..::::.::::::::..: CCDS31 FREHLLKNFDFDFGFCIPSSRNTCEHIYEFPQLSEDVIRLMIENPYETRSDSFYFVDNKL 180 190 200 210 220 230 230 240 pF1KE1 VMHNKADYSYSGTP .:::::::.:.: CCDS31 IMHNKADYAYNGGQ 240 250 240 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:28:52 2016 done: Mon Nov 7 15:28:53 2016 Total Scan time: 2.590 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]