FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1685, 197 aa 1>>>pF1KE1685 197 - 197 aa - 197 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3721+/-0.000583; mu= 13.8495+/- 0.035 mean_var=74.4602+/-14.854, 0's: 0 Z-trim(113.4): 12 B-trim: 10 in 1/53 Lambda= 0.148632 statistics sampled from 14073 (14083) to 14073 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.433), width: 16 Scan time: 2.280 The best scores are: opt bits E(32554) CCDS42217.1 IL17C gene_id:27189|Hs108|chr16 ( 197) 1393 306.9 5.1e-84 CCDS9292.1 IL17D gene_id:53342|Hs108|chr13 ( 202) 272 66.6 1.2e-11 >>CCDS42217.1 IL17C gene_id:27189|Hs108|chr16 (197 aa) initn: 1393 init1: 1393 opt: 1393 Z-score: 1621.9 bits: 306.9 E(32554): 5.1e-84 Smith-Waterman score: 1393; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197) 10 20 30 40 50 60 pF1KE1 MTLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQAPPHLLARGAKWGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MTLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQAPPHLLARGAKWGQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ALPVALVSSLEAASHRGRHERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 ALPVALVSSLEAASHRGRHERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDRY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRPCSRDGSGLPTPGAFAFHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 PQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRPCSRDGSGLPTPGAFAFHT 130 140 150 160 170 180 190 pF1KE1 EFIHVPVGCTCVLPRSV ::::::::::::::::: CCDS42 EFIHVPVGCTCVLPRSV 190 >>CCDS9292.1 IL17D gene_id:53342|Hs108|chr13 (202 aa) initn: 285 init1: 203 opt: 272 Z-score: 322.7 bits: 66.6 E(32554): 1.2e-11 Smith-Waterman score: 272; 32.7% identity (59.4% similar) in 165 aa overlap (32-192:17-170) 10 20 30 40 50 pF1KE1 TLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQA--PPHLLARGAKWG :.:. : : : : .:: . .: CCDS92 MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQ--LYG 10 20 30 40 60 70 80 90 100 110 pF1KE1 QALPVALVSSLEAASHRGRHERPSATTQCPVL-RP-EEVLEADTHQRSISPWRYRVDTDE . : ....:... . . : .:. .. ::. :: .. .. :. ::.::: ::.. : CCDS92 R-LAAGVLSAFHHTLQLGPREQARNAS-CPAGGRPADRRFRPPTNLRSVSPWAYRISYDP 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 DRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRPCSRDGSGLPTPGAFA :::. : : ::::::. . :.: . . :. . . .:::: : : .. : . CCDS92 ARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEA--- 110 120 130 140 150 180 190 pF1KE1 FHTEFIHVPVGCTCVLPRSV .. .::::::: CCDS92 ----YVTIPVGCTCVPEPEKDADSINSSIDKQGAKLLLGPNDAPAGP 160 170 180 190 200 197 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:26:43 2016 done: Mon Nov 7 15:26:43 2016 Total Scan time: 2.280 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]