FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4034, 244 aa 1>>>pF1KE4034 244 - 244 aa - 244 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5305+/-0.000703; mu= 14.2024+/- 0.043 mean_var=86.2096+/-17.635, 0's: 0 Z-trim(112.8): 53 B-trim: 818 in 2/48 Lambda= 0.138133 statistics sampled from 13412 (13477) to 13412 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.414), width: 16 Scan time: 2.460 The best scores are: opt bits E(32554) CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 1655 338.9 1.9e-93 CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 320 72.7 1.8e-13 CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 313 71.3 4.7e-13 CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 313 71.4 4.8e-13 CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 307 70.2 1.1e-12 CCDS59474.1 ARL9 gene_id:132946|Hs108|chr4 ( 123) 304 69.4 1.2e-12 CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 302 69.2 2.2e-12 CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 298 68.4 3.8e-12 CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 297 68.2 4.3e-12 CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 295 67.8 5.7e-12 CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 295 67.8 5.7e-12 CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 291 67.0 9.9e-12 CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 289 66.6 1.4e-11 CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 287 66.2 1.9e-11 CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 284 65.6 2.8e-11 >>CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 (244 aa) initn: 1655 init1: 1655 opt: 1655 Z-score: 1791.3 bits: 338.9 E(32554): 1.9e-93 Smith-Waterman score: 1655; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244) 10 20 30 40 50 60 pF1KE4 MAPRPLGPLVLALGGAAAVLGSVLFILWKTYFGRGRERRWDRGEAWWGAEAARLPEWDEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MAPRPLGPLVLALGGAAAVLGSVLFILWKTYFGRGRERRWDRGEAWWGAEAARLPEWDEW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 DPEDEEDEEPALEELEQREVLVLGLDGAGKSTFLRVLSGKPPLEGHIPTWGFNSVRLPTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 DPEDEEDEEPALEELEQREVLVLGLDGAGKSTFLRVLSGKPPLEGHIPTWGFNSVRLPTK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 DFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKDPDLPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 DFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKDPDLPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 VVVANKQDLSEAMSMGELQRELGLQAIDNQREVFLLAASIAPAGPTFEEPGTVHIWKLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VVVANKQDLSEAMSMGELQRELGLQAIDNQREVFLLAASIAPAGPTFEEPGTVHIWKLLL 190 200 210 220 230 240 pF1KE4 ELLS :::: CCDS44 ELLS >>CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 (182 aa) initn: 314 init1: 201 opt: 320 Z-score: 355.2 bits: 72.7 E(32554): 1.8e-13 Smith-Waterman score: 320; 38.4% identity (74.6% similar) in 138 aa overlap (76-210:16-151) 50 60 70 80 90 100 pF1KE4 WWGAEAARLPEWDEWDPEDEEDEEPALEELEQREVLVLGLDGAGKSTFLRVLSGKPPLEG .. ..:.::::.:::.:.:. :... . CCDS75 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI--S 10 20 30 40 110 120 130 140 150 160 pF1KE4 HI-PTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWA :: :: ::: . .. :.... .:::....: :::.. ..:.:..:.::::: :. . CCDS75 HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEET 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE4 RQELHKLLDKDPD--LPVVVVANKQDLSEAMSMGELQRELGLQAIDNQREVFLLAASIAP ::: .::... .::.. :::::: : .:. . :.:..: .. CCDS75 GQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 110 120 130 140 150 160 230 240 pF1KE4 AGPTFEEPGTVHIWKLLLELLS CCDS75 EGVQDGMNWVCKNVNAKKK 170 180 >>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa) initn: 310 init1: 186 opt: 313 Z-score: 347.9 bits: 71.3 E(32554): 4.7e-13 Smith-Waterman score: 313; 37.8% identity (67.3% similar) in 156 aa overlap (76-229:13-164) 50 60 70 80 90 100 pF1KE4 WWGAEAARLPEWDEWDPEDEEDEEPALEELEQREVLVLGLDGAGKSTFLRVLSGKPPLEG :.: .:.::::.:::.:.: :. . CCDS96 MGKVLSKIFGNKEMR-ILMLGLDAAGKTTILYKLKLGQSVTT 10 20 30 40 110 120 130 140 150 160 pF1KE4 HIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWAR ::: ::: . :. . .. ..::....: :... . .. :.:::: ::: :. :: CCDS96 -IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE4 QELHKLL-DKDP-DLPVVVVANKQDLSEAMSMGELQRELGLQAIDNQREVFLLAASIAPA ::::... :.. : ... :::::: .::. :.:..::: : .. . . : : . CCDS96 QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRN--WYVQPSCATS 110 120 130 140 150 230 240 pF1KE4 GPTFEEPGTVHIWKLLLELLS : . : CCDS96 GDGLYEGLTWLTSNYKS 160 170 >>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa) initn: 310 init1: 165 opt: 313 Z-score: 347.7 bits: 71.4 E(32554): 4.8e-13 Smith-Waterman score: 313; 37.8% identity (69.6% similar) in 148 aa overlap (76-219:17-161) 50 60 70 80 90 100 pF1KE4 WWGAEAARLPEWDEWDPEDEEDEEPALEELEQREVLVLGLDGAGKSTFL-RVLSGKPPLE :.: .:.::::::::.:.: :. :. . CCDS44 MGGFFSSIFSSLFGTREMR-ILILGLDGAGKTTILYRLQVGE--VV 10 20 30 40 110 120 130 140 150 160 pF1KE4 GHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWA ::: ::: . :... .. ..::. ..: ::. . :..:....:::: :: :. . CCDS44 TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGIS 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE4 RQELHKLLDKDP--DLPVVVVANKQDLSEAMSMGELQRELGLQAI-DNQREVFLLAASIA ..:: .:... .:: :::::. .::. .:. ::: :. : . ..: .:. CCDS44 KSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKG 110 120 130 140 150 160 230 240 pF1KE4 PAGPTFEEPGTVHIWKLLLELLS CCDS44 TGLDEAMEWLVETLKSRQ 170 180 >>CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 (186 aa) initn: 302 init1: 238 opt: 307 Z-score: 341.1 bits: 70.2 E(32554): 1.1e-12 Smith-Waterman score: 307; 36.2% identity (73.0% similar) in 141 aa overlap (76-213:19-157) 50 60 70 80 90 100 pF1KE4 WWGAEAARLPEWDEWDPEDEEDEEPALEELEQREVLVLGLDGAGKSTFLRVLSGKPPLEG :. :. ..::. .::.::. :... : CCDS25 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSED 10 20 30 40 110 120 130 140 150 160 pF1KE4 HIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWAR ::: ::: .. . . . .:::. .: .:... :...:...:.::: .. .: CCDS25 MIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASR 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE4 QELHKLLDKDPDL---PVVVVANKQDLSEAMSMGELQRELGLQAIDNQREVFLLAASIAP .:::.:::: :.: ::.:..::.:: .:.. .: ....:.::.. ::. CCDS25 NELHNLLDK-PQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQD-REICCYSISCKE 110 120 130 140 150 160 230 240 pF1KE4 AGPTFEEPGTVHIWKLLLELLS CCDS25 KDNIDITLQWLIQHSKSRRS 170 180 >>CCDS59474.1 ARL9 gene_id:132946|Hs108|chr4 (123 aa) initn: 324 init1: 291 opt: 304 Z-score: 340.3 bits: 69.4 E(32554): 1.2e-12 Smith-Waterman score: 304; 41.3% identity (74.4% similar) in 121 aa overlap (124-244:1-119) 100 110 120 130 140 150 pF1KE4 LRVLSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVV ...::::::. .: ::. ..:. .:.::: CCDS59 MEFLEIGGSKPFRSYWEMYLSKGLLLIFVV 10 20 30 160 170 180 190 200 210 pF1KE4 DSADRLRLPWARQELHKLLDKDPDLPVVVVANKQDLSEAMSMGELQRELGLQAIDNQREV ::::. ::: :.. ::.:. .: ::.:: :::::: :. . .... :.:. . :.:.. CCDS59 DSADHSRLPEAKKYLHQLIAANPVLPLVVFANKQDLEAAYHITDIHEALALSEVGNDRKM 40 50 60 70 80 90 220 230 240 pF1KE4 FLLAASIAPAGPTFEEPGTVHIWKLLLELLS ::... .. : : :.:.. : :. :. CCDS59 FLFGTYLTKNGS--EIPSTMQDAKDLIAQLAADVQ 100 110 120 >>CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 (186 aa) initn: 296 init1: 231 opt: 302 Z-score: 335.7 bits: 69.2 E(32554): 2.2e-12 Smith-Waterman score: 302; 36.7% identity (70.0% similar) in 150 aa overlap (67-213:10-157) 40 50 60 70 80 90 pF1KE4 ERRWDRGEAWWGAEAARLPEWDEWDPEDEEDEEPALEELEQREVLVLGLDGAGKSTFLRV : :: :. :. ..::. .::.::. : CCDS14 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNV 10 20 30 100 110 120 130 140 150 pF1KE4 LSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSA ... : ::: ::: .. . . : .:::. .: .:... :...:..::.: CCDS14 IASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE4 DRLRLPWARQELHKLLDKDPDL---PVVVVANKQDLSEAMSMGELQRELGLQAIDNQREV :. .. ...:::.:::: :.: ::.:..::.:: :.. :: ....:.::.. ::. CCDS14 DQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD-REI 100 110 120 130 140 150 220 230 240 pF1KE4 FLLAASIAPAGPTFEEPGTVHIWKLLLELLS CCDS14 CCYSISCKEKDNIDITLQWLIQHSKSRRS 160 170 180 >>CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 (184 aa) initn: 285 init1: 188 opt: 298 Z-score: 331.5 bits: 68.4 E(32554): 3.8e-12 Smith-Waterman score: 298; 36.6% identity (71.1% similar) in 142 aa overlap (72-207:7-147) 50 60 70 80 90 pF1KE4 RGEAWWGAEAARLPEWDEWDPEDEEDEEPALEELEQRE----VLVLGLDGAGKSTFLRVL :....:.: .:.::::.:::.:.:. . CCDS80 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKF 10 20 30 100 110 120 130 140 150 pF1KE4 SGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSAD .:. .. :: ::: : . :.... ..::...:: ::... .: :..:::::: CCDS80 NGED-IDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE4 RLRLPWARQELHKLL--DKDPDLPVVVVANKQDLSEAMSMGELQRELGLQAIDNQREVFL : :. ..::..:: .. ... :::::: :.: . ... : :..: CCDS80 RQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQ 100 110 120 130 140 150 220 230 240 pF1KE4 LAASIAPAGPTFEEPGTVHIWKLLLELLS CCDS80 GCSAVTGENLLPGIDWLLDDISSRIFTAD 160 170 180 >>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa) initn: 277 init1: 159 opt: 297 Z-score: 330.5 bits: 68.2 E(32554): 4.3e-12 Smith-Waterman score: 297; 36.3% identity (68.2% similar) in 157 aa overlap (76-229:16-168) 50 60 70 80 90 100 pF1KE4 WWGAEAARLPEWDEWDPEDEEDEEPALEELEQREVLVLGLDGAGKSTFLRVLS-GKPPLE .: ..:..:::.:::.:.: :. :. . CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGE--IV 10 20 30 40 110 120 130 140 150 160 pF1KE4 GHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWA ::: ::: . :.. . ..::.. .: ::.. .... :.::::: :: :. . CCDS28 TTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEV 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE4 RQELHKLL--DKDPDLPVVVVANKQDLSEAMSMGELQRELGLQAIDNQREVFLLAASIAP .::.:.: :. : ... :::::: .::...:. .::::.. :. .. . :. : CCDS28 ADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNR--TWYVQATCAT 110 120 130 140 150 160 230 240 pF1KE4 AGPTFEEPGTVHIWKLLLELLS : . : CCDS28 QGTGLYEGLDWLSNELSKR 170 180 >>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa) initn: 277 init1: 175 opt: 295 Z-score: 328.3 bits: 67.8 E(32554): 5.7e-12 Smith-Waterman score: 295; 36.3% identity (68.2% similar) in 157 aa overlap (76-229:17-168) 50 60 70 80 90 100 pF1KE4 WWGAEAARLPEWDEWDPEDEEDEEPALEELEQREVLVLGLDGAGKSTFLRVLS-GKPPLE :.: .:..:::.:::.:.: :. :. . CCDS87 MGNIFGNLLKSLIGKKEMR-ILMVGLDAAGKTTILYKLKLGE--IV 10 20 30 40 110 120 130 140 150 160 pF1KE4 GHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWA ::: ::: . :.. . ..::....: :... .... :.::::: :: :. : CCDS87 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE4 RQELHKLLDKDP--DLPVVVVANKQDLSEAMSMGELQRELGLQAIDNQREVFLLAASIAP :.:: ..: .: : ..: :::::: .::. .:. .:::... .. . . :. : CCDS87 REELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRN--WYIQATCAT 110 120 130 140 150 160 230 240 pF1KE4 AGPTFEEPGTVHIWKLLLELLS .: . : CCDS87 SGDGLYEGLDWLANQLKNKK 170 180 244 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:14:46 2016 done: Mon Nov 7 15:14:47 2016 Total Scan time: 2.460 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]