FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3032, 161 aa 1>>>pF1KE3032 161 - 161 aa - 161 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8663+/-0.000723; mu= 14.4950+/- 0.044 mean_var=59.7650+/-11.597, 0's: 0 Z-trim(108.9): 47 B-trim: 0 in 0/51 Lambda= 0.165902 statistics sampled from 10506 (10553) to 10506 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.324), width: 16 Scan time: 1.910 The best scores are: opt bits E(32554) CCDS47189.1 UBE2QL1 gene_id:134111|Hs108|chr5 ( 161) 1079 266.0 7.2e-72 CCDS1069.1 UBE2Q1 gene_id:55585|Hs108|chr1 ( 422) 605 152.8 2.2e-37 CCDS66839.1 UBE2Q2 gene_id:92912|Hs108|chr15 ( 340) 566 143.4 1.2e-34 CCDS45309.1 UBE2Q2 gene_id:92912|Hs108|chr15 ( 359) 566 143.4 1.3e-34 CCDS10286.1 UBE2Q2 gene_id:92912|Hs108|chr15 ( 375) 566 143.4 1.3e-34 >>CCDS47189.1 UBE2QL1 gene_id:134111|Hs108|chr5 (161 aa) initn: 1079 init1: 1079 opt: 1079 Z-score: 1403.8 bits: 266.0 E(32554): 7.2e-72 Smith-Waterman score: 1079; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE3 MKELQDIARLSDRFISVELVDESLFDWNVKLHQVDKDSVLWQDMKETNTEFILLNLTFPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MKELQDIARLSDRFISVELVDESLFDWNVKLHQVDKDSVLWQDMKETNTEFILLNLTFPD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 NFPFSPPFMRVLSPRLENGYVLDGGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 NFPFSPPFMRVLSPRLENGYVLDGGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGR 70 80 90 100 110 120 130 140 150 160 pF1KE3 ICRKAGKSKKSFSRKEAEATFKSLVKTHEKYGWVTPPVSDG ::::::::::::::::::::::::::::::::::::::::: CCDS47 ICRKAGKSKKSFSRKEAEATFKSLVKTHEKYGWVTPPVSDG 130 140 150 160 >>CCDS1069.1 UBE2Q1 gene_id:55585|Hs108|chr1 (422 aa) initn: 514 init1: 371 opt: 605 Z-score: 784.6 bits: 152.8 E(32554): 2.2e-37 Smith-Waterman score: 605; 56.2% identity (80.5% similar) in 169 aa overlap (1-161:257-422) 10 20 pF1KE3 MKELQDIARLSDRF----ISVELVDESLFD ::::.:: : :. : .::::..::.: CCDS10 LAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYR-SQSFKGGNYAVELVNDSLYD 230 240 250 260 270 280 30 40 50 60 70 80 pF1KE3 WNVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVL ::::: .::.::.: .:.. . ...:::::..: :::::.:::.::.:: : .:::: CCDS10 WNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVL 290 300 310 320 330 340 90 100 110 120 130 140 pF1KE3 DGGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFK :::::::::: .::::::..:.:. :..:.::::..:. :.::. :..: :. ..: CCDS10 GGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANKSQYSLTR--AQQSYK 350 360 370 380 390 400 150 160 pF1KE3 SLVKTHEKYGWVTPPVSDG :::. ::: :: ::: :: CCDS10 SLVQIHEKNGWYTPPKEDG 410 420 >>CCDS66839.1 UBE2Q2 gene_id:92912|Hs108|chr15 (340 aa) initn: 590 init1: 326 opt: 566 Z-score: 735.5 bits: 143.4 E(32554): 1.2e-34 Smith-Waterman score: 566; 50.6% identity (78.6% similar) in 168 aa overlap (1-161:175-340) 10 20 pF1KE3 MKELQDIARLSDR---FISVELVDESLFDW ::::.:: : .. . ::::...::.:: CCDS66 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW 150 160 170 180 190 200 30 40 50 60 70 80 pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD .:::..:: :: : .:.. . . :.::::..: :::::.:::.::. : : .:::: CCDS66 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG 210 220 230 240 250 260 90 100 110 120 130 140 pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS :::.:::::: .::::::..:.:. :. :.::::..:. . : .:.... .:. ...: CCDS66 GGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--QFGANKNQYNLARAQQSYNS 270 280 290 300 310 320 150 160 pF1KE3 LVKTHEKYGWVTPPVSDG .:. ::: :: ::: :: CCDS66 IVQIHEKNGWYTPPKEDG 330 340 >>CCDS45309.1 UBE2Q2 gene_id:92912|Hs108|chr15 (359 aa) initn: 590 init1: 326 opt: 566 Z-score: 735.1 bits: 143.4 E(32554): 1.3e-34 Smith-Waterman score: 566; 50.6% identity (78.6% similar) in 168 aa overlap (1-161:194-359) 10 20 pF1KE3 MKELQDIARLSDR---FISVELVDESLFDW ::::.:: : .. . ::::...::.:: CCDS45 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW 170 180 190 200 210 220 30 40 50 60 70 80 pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD .:::..:: :: : .:.. . . :.::::..: :::::.:::.::. : : .:::: CCDS45 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG 230 240 250 260 270 280 90 100 110 120 130 140 pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS :::.:::::: .::::::..:.:. :. :.::::..:. . : .:.... .:. ...: CCDS45 GGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--QFGANKNQYNLARAQQSYNS 290 300 310 320 330 340 150 160 pF1KE3 LVKTHEKYGWVTPPVSDG .:. ::: :: ::: :: CCDS45 IVQIHEKNGWYTPPKEDG 350 >>CCDS10286.1 UBE2Q2 gene_id:92912|Hs108|chr15 (375 aa) initn: 590 init1: 326 opt: 566 Z-score: 734.9 bits: 143.4 E(32554): 1.3e-34 Smith-Waterman score: 566; 50.6% identity (78.6% similar) in 168 aa overlap (1-161:210-375) 10 20 pF1KE3 MKELQDIARLSDR---FISVELVDESLFDW ::::.:: : .. . ::::...::.:: CCDS10 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW 180 190 200 210 220 230 30 40 50 60 70 80 pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD .:::..:: :: : .:.. . . :.::::..: :::::.:::.::. : : .:::: CCDS10 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG 240 250 260 270 280 290 90 100 110 120 130 140 pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS :::.:::::: .::::::..:.:. :. :.::::..:. . : .:.... .:. ...: CCDS10 GGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--QFGANKNQYNLARAQQSYNS 300 310 320 330 340 350 150 160 pF1KE3 LVKTHEKYGWVTPPVSDG .:. ::: :: ::: :: CCDS10 IVQIHEKNGWYTPPKEDG 360 370 161 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 14:40:00 2016 done: Mon Nov 7 14:40:00 2016 Total Scan time: 1.910 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]