FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9976, 707 aa 1>>>pF1KB9976 707 - 707 aa - 707 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 18.1408+/-0.000538; mu= -32.9225+/- 0.034 mean_var=1145.0702+/-233.577, 0's: 0 Z-trim(127.1): 205 B-trim: 0 in 0/62 Lambda= 0.037902 statistics sampled from 54327 (54645) to 54327 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.842), E-opt: 0.2 (0.641), width: 16 Scan time: 16.170 The best scores are: opt bits E(85289) XP_005271169 (OMIM: 605199) PREDICTED: splicing fa ( 707) 5111 295.2 6e-79 XP_016857543 (OMIM: 605199) PREDICTED: splicing fa ( 707) 5111 295.2 6e-79 XP_016857542 (OMIM: 605199) PREDICTED: splicing fa ( 707) 5111 295.2 6e-79 NP_005057 (OMIM: 605199) splicing factor, proline- ( 707) 5111 295.2 6e-79 XP_005271170 (OMIM: 605199) PREDICTED: splicing fa ( 707) 5111 295.2 6e-79 XP_005271172 (OMIM: 605199) PREDICTED: splicing fa ( 669) 4776 276.8 1.9e-73 XP_011540252 (OMIM: 605199) PREDICTED: splicing fa ( 679) 4776 276.8 1.9e-73 XP_006719907 (OMIM: 612408) PREDICTED: paraspeckle ( 523) 1783 113.1 2.9e-24 NP_001035879 (OMIM: 612408) paraspeckle component ( 523) 1783 113.1 2.9e-24 XP_011533439 (OMIM: 612408) PREDICTED: paraspeckle ( 469) 1758 111.6 7e-24 NP_031389 (OMIM: 300084,300967) non-POU domain-con ( 471) 1716 109.3 3.4e-23 NP_001138881 (OMIM: 300084,300967) non-POU domain- ( 471) 1716 109.3 3.4e-23 NP_001138880 (OMIM: 300084,300967) non-POU domain- ( 471) 1716 109.3 3.4e-23 XP_011533444 (OMIM: 612408) PREDICTED: paraspeckle ( 406) 1645 105.4 4.6e-22 XP_016876139 (OMIM: 612408) PREDICTED: paraspeckle ( 393) 1638 105.0 5.8e-22 XP_011533443 (OMIM: 612408) PREDICTED: paraspeckle ( 409) 1638 105.0 6e-22 XP_011533442 (OMIM: 612408) PREDICTED: paraspeckle ( 417) 1638 105.0 6.1e-22 XP_011533441 (OMIM: 612408) PREDICTED: paraspeckle ( 417) 1638 105.0 6.1e-22 XP_011533440 (OMIM: 612408) PREDICTED: paraspeckle ( 447) 1638 105.1 6.4e-22 NP_001138882 (OMIM: 300084,300967) non-POU domain- ( 382) 1463 95.4 4.4e-19 NP_006239 (OMIM: 168810) basic salivary proline-ri ( 416) 538 44.9 0.00078 NP_005030 (OMIM: 180989) basic salivary proline-ri ( 331) 532 44.4 0.00083 NP_006240 (OMIM: 168840) basic salivary proline-ri ( 309) 520 43.8 0.0013 XP_016857329 (OMIM: 606373,616193) PREDICTED: form (1102) 514 44.0 0.0038 XP_016857330 (OMIM: 606373,616193) PREDICTED: form (1102) 514 44.0 0.0038 XP_016857328 (OMIM: 606373,616193) PREDICTED: form (1159) 514 44.0 0.0039 XP_011542539 (OMIM: 606373,616193) PREDICTED: form (1360) 514 44.1 0.0044 XP_016857327 (OMIM: 606373,616193) PREDICTED: form (1384) 514 44.1 0.0044 XP_016857326 (OMIM: 606373,616193) PREDICTED: form (1417) 514 44.1 0.0045 NP_064450 (OMIM: 606373,616193) formin-2 isoform 2 (1722) 514 44.2 0.0051 NP_001292353 (OMIM: 606373,616193) formin-2 isofor (1726) 514 44.2 0.0051 >>XP_005271169 (OMIM: 605199) PREDICTED: splicing factor (707 aa) initn: 5111 init1: 5111 opt: 5111 Z-score: 1538.4 bits: 295.2 E(85289): 6e-79 Smith-Waterman score: 5111; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707) 10 20 30 40 50 60 pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS 610 620 630 640 650 660 670 680 690 700 pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF ::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF 670 680 690 700 >>XP_016857543 (OMIM: 605199) PREDICTED: splicing factor (707 aa) initn: 5111 init1: 5111 opt: 5111 Z-score: 1538.4 bits: 295.2 E(85289): 6e-79 Smith-Waterman score: 5111; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707) 10 20 30 40 50 60 pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS 610 620 630 640 650 660 670 680 690 700 pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF ::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF 670 680 690 700 >>XP_016857542 (OMIM: 605199) PREDICTED: splicing factor (707 aa) initn: 5111 init1: 5111 opt: 5111 Z-score: 1538.4 bits: 295.2 E(85289): 6e-79 Smith-Waterman score: 5111; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707) 10 20 30 40 50 60 pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS 610 620 630 640 650 660 670 680 690 700 pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF ::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF 670 680 690 700 >>NP_005057 (OMIM: 605199) splicing factor, proline- and (707 aa) initn: 5111 init1: 5111 opt: 5111 Z-score: 1538.4 bits: 295.2 E(85289): 6e-79 Smith-Waterman score: 5111; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707) 10 20 30 40 50 60 pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS 610 620 630 640 650 660 670 680 690 700 pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF ::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF 670 680 690 700 >>XP_005271170 (OMIM: 605199) PREDICTED: splicing factor (707 aa) initn: 5111 init1: 5111 opt: 5111 Z-score: 1538.4 bits: 295.2 E(85289): 6e-79 Smith-Waterman score: 5111; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707) 10 20 30 40 50 60 pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS 610 620 630 640 650 660 670 680 690 700 pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF ::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF 670 680 690 700 >>XP_005271172 (OMIM: 605199) PREDICTED: splicing factor (669 aa) initn: 4776 init1: 4776 opt: 4776 Z-score: 1439.7 bits: 276.8 E(85289): 1.9e-73 Smith-Waterman score: 4776; 100.0% identity (100.0% similar) in 662 aa overlap (1-662:1-662) 10 20 30 40 50 60 pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS 610 620 630 640 650 660 670 680 690 700 pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF :: XP_005 DMVRMIDVG >>XP_011540252 (OMIM: 605199) PREDICTED: splicing factor (679 aa) initn: 4776 init1: 4776 opt: 4776 Z-score: 1439.6 bits: 276.8 E(85289): 1.9e-73 Smith-Waterman score: 4776; 100.0% identity (100.0% similar) in 662 aa overlap (1-662:1-662) 10 20 30 40 50 60 pF1KB9 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLM 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRM 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGS 610 620 630 640 650 660 670 680 690 700 pF1KB9 DMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF :: XP_011 DMVMYPVGRSTKEILIFTT 670 >>XP_006719907 (OMIM: 612408) PREDICTED: paraspeckle com (523 aa) initn: 1710 init1: 1586 opt: 1783 Z-score: 556.6 bits: 113.1 E(85289): 2.9e-24 Smith-Waterman score: 1836; 60.5% identity (81.0% similar) in 484 aa overlap (259-707:45-523) 230 240 250 260 270 280 pF1KB9 GHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRP : : .:. :.. .. :: ... . .: XP_006 NPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAP-PEDHPDEEMGFTIDIKSFLKP 20 30 40 50 60 70 290 300 310 320 330 340 pF1KB9 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIA :::::::::::::::::.::::..::::: .::::.:::::. .:::::.::::.::::: XP_006 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIA 80 90 100 110 120 130 350 360 370 380 390 400 pF1KB9 KAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRG ::::: : ...: ::.:::::.:::.:.:::: :::::::.:::::::.:.:::.::::: XP_006 KAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRG 140 150 160 170 180 190 410 420 430 440 450 460 pF1KB9 RSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNP :.::::.::::.:: ::::.:::..:.::::::::::::::.::.:::::::::: ::. XP_006 RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQ 200 210 220 230 240 250 470 480 490 500 510 520 pF1KB9 MYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYH .:.:::: :::::: ::::.::..:::.::::::::::::..:...::.:::.::: : : XP_006 QYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARH 260 270 280 290 300 310 530 540 550 560 570 580 pF1KB9 EHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQ ::: :.:::::::::::::.:::.:::.::::..:::.:::.::::::: ::.::.:: XP_006 EHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEM-IRHREQEE- 320 330 340 350 360 370 590 600 610 620 630 640 pF1KB9 MRRQREESYSRMGYMDPRERDMRMGG-G--GAMNMGD---PYGSGGQKFPPLGGGGGIGY .::: .:.. . .::. ::..:::: : ::.:::: : .:.: ::. : . . XP_006 LRRQ-QEGF-KPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNR 380 390 400 410 420 650 660 670 pF1KB9 EANPGVP--PATMSG----SMMGSDM-------RTERFGQGG----AGPVGG-------Q . :: : :. : . ::. : ...:: :: ..:.:. : XP_006 ATIPGPPMGPGPAMGPEGAANMGTPMMPDNGAVHNDRFPQGPPSQMGSPMGSRTGSETPQ 430 440 450 460 470 480 680 690 700 pF1KB9 GP-RGMGP--GTPAGYGRGRE--EYEGPNKKPRF .: :.:: : :.:.::: . ..:::::. :. XP_006 APMSGVGPVSGGPGGFGRGSQGGNFEGPNKRRRY 490 500 510 520 >>NP_001035879 (OMIM: 612408) paraspeckle component 1 [H (523 aa) initn: 1710 init1: 1586 opt: 1783 Z-score: 556.6 bits: 113.1 E(85289): 2.9e-24 Smith-Waterman score: 1836; 60.5% identity (81.0% similar) in 484 aa overlap (259-707:45-523) 230 240 250 260 270 280 pF1KB9 GHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRP : : .:. :.. .. :: ... . .: NP_001 NPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAP-PEDHPDEEMGFTIDIKSFLKP 20 30 40 50 60 70 290 300 310 320 330 340 pF1KB9 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIA :::::::::::::::::.::::..::::: .::::.:::::. .:::::.::::.::::: NP_001 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIA 80 90 100 110 120 130 350 360 370 380 390 400 pF1KB9 KAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRG ::::: : ...: ::.:::::.:::.:.:::: :::::::.:::::::.:.:::.::::: NP_001 KAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRG 140 150 160 170 180 190 410 420 430 440 450 460 pF1KB9 RSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNP :.::::.::::.:: ::::.:::..:.::::::::::::::.::.:::::::::: ::. NP_001 RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQ 200 210 220 230 240 250 470 480 490 500 510 520 pF1KB9 MYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYH .:.:::: :::::: ::::.::..:::.::::::::::::..:...::.:::.::: : : NP_001 QYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARH 260 270 280 290 300 310 530 540 550 560 570 580 pF1KB9 EHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQ ::: :.:::::::::::::.:::.:::.::::..:::.:::.::::::: ::.::.:: NP_001 EHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEM-IRHREQEE- 320 330 340 350 360 370 590 600 610 620 630 640 pF1KB9 MRRQREESYSRMGYMDPRERDMRMGG-G--GAMNMGD---PYGSGGQKFPPLGGGGGIGY .::: .:.. . .::. ::..:::: : ::.:::: : .:.: ::. : . . NP_001 LRRQ-QEGF-KPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNR 380 390 400 410 420 650 660 670 pF1KB9 EANPGVP--PATMSG----SMMGSDM-------RTERFGQGG----AGPVGG-------Q . :: : :. : . ::. : ...:: :: ..:.:. : NP_001 ATIPGPPMGPGPAMGPEGAANMGTPMMPDNGAVHNDRFPQGPPSQMGSPMGSRTGSETPQ 430 440 450 460 470 480 680 690 700 pF1KB9 GP-RGMGP--GTPAGYGRGRE--EYEGPNKKPRF .: :.:: : :.:.::: . ..:::::. :. NP_001 APMSGVGPVSGGPGGFGRGSQGGNFEGPNKRRRY 490 500 510 520 >>XP_011533439 (OMIM: 612408) PREDICTED: paraspeckle com (469 aa) initn: 1773 init1: 1586 opt: 1758 Z-score: 549.7 bits: 111.6 E(85289): 7e-24 Smith-Waterman score: 1758; 64.2% identity (84.8% similar) in 422 aa overlap (259-672:45-461) 230 240 250 260 270 280 pF1KB9 GHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRP : : .:. :.. .. :: ... . .: XP_011 NPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAP-PEDHPDEEMGFTIDIKSFLKP 20 30 40 50 60 70 290 300 310 320 330 340 pF1KB9 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIA :::::::::::::::::.::::..::::: .::::.:::::. .:::::.::::.::::: XP_011 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIA 80 90 100 110 120 130 350 360 370 380 390 400 pF1KB9 KAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRG ::::: : ...: ::.:::::.:::.:.:::: :::::::.:::::::.:.:::.::::: XP_011 KAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRG 140 150 160 170 180 190 410 420 430 440 450 460 pF1KB9 RSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNP :.::::.::::.:: ::::.:::..:.::::::::::::::.::.:::::::::: ::. XP_011 RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQ 200 210 220 230 240 250 470 480 490 500 510 520 pF1KB9 MYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYH .:.:::: :::::: ::::.::..:::.::::::::::::..:...::.:::.::: : : XP_011 QYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARH 260 270 280 290 300 310 530 540 550 560 570 580 pF1KB9 EHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQ ::: :.:::::::::::::.:::.:::.::::..:::.:::.::::::: ::.::.:: XP_011 EHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEM-IRHREQEE- 320 330 340 350 360 370 590 600 610 620 630 640 pF1KB9 MRRQREESYSRMGYMDPRERDMRMGG-G--GAMNMGD---PYGSGGQKFPPLGGGGGIGY .::: .:.. . .::. ::..:::: : ::.:::: : .:.: ::. : . . XP_011 LRRQ-QEGF-KPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNR 380 390 400 410 420 650 660 670 680 690 700 pF1KB9 EANPGVP--PATMSGSMMGSDMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEG . :: : :. : ...: : . ..:: XP_011 ATIPGPPMGPGPAMGPEGAANMGTPMMPDNGAVGDKRKCG 430 440 450 460 pF1KB9 PNKKPRF 707 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 14:38:07 2016 done: Mon Nov 7 14:38:09 2016 Total Scan time: 16.170 Total Display time: 0.190 Function used was FASTA [36.3.4 Apr, 2011]