Result of FASTA (omim) for
pFN21AB6465
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6465, 322 aa
1>>>pF1KB6465 322 - 322 aa - 322 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8718+/-0.000591; mu= -6.0113+/- 0.035
mean_var=621.5585+/-148.843, 0's: 0 Z-trim(114.5): 207 B-trim: 33 in 1/53
Lambda= 0.051444
statistics sampled from 24155 (24362) to 24155 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.286), width: 16
Scan time: 7.410
The best scores are: opt bits E(85289)
NP_060962 (OMIM: 611210) lymphokine-activated kill ( 322) 2149 175.0 1.8e-43
XP_006716431 (OMIM: 611210) PREDICTED: lymphokine- ( 322) 2149 175.0 1.8e-43
NP_001265874 (OMIM: 611210) lymphokine-activated k ( 333) 1312 112.9 9.3e-25
>>NP_060962 (OMIM: 611210) lymphokine-activated killer T (322 aa)
initn: 2149 init1: 2149 opt: 2149 Z-score: 901.3 bits: 175.0 E(85289): 1.8e-43
Smith-Waterman score: 2149; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)
10 20 30 40 50 60
pF1KB6 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAVEENGVITDKADIFAFGLTLWEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAVEENGVITDKADIFAFGLTLWEM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 MTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDESYQKVIELFSVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDESYQKVIELFSVC
250 260 270 280 290 300
310 320
pF1KB6 TNEDPKDRPSAAHIVEALETDV
::::::::::::::::::::::
NP_060 TNEDPKDRPSAAHIVEALETDV
310 320
>>XP_006716431 (OMIM: 611210) PREDICTED: lymphokine-acti (322 aa)
initn: 2149 init1: 2149 opt: 2149 Z-score: 901.3 bits: 175.0 E(85289): 1.8e-43
Smith-Waterman score: 2149; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)
10 20 30 40 50 60
pF1KB6 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAVEENGVITDKADIFAFGLTLWEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAVEENGVITDKADIFAFGLTLWEM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 MTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDESYQKVIELFSVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDESYQKVIELFSVC
250 260 270 280 290 300
310 320
pF1KB6 TNEDPKDRPSAAHIVEALETDV
::::::::::::::::::::::
XP_006 TNEDPKDRPSAAHIVEALETDV
310 320
>>NP_001265874 (OMIM: 611210) lymphokine-activated kille (333 aa)
initn: 1312 init1: 1312 opt: 1312 Z-score: 565.4 bits: 112.9 E(85289): 9.3e-25
Smith-Waterman score: 2117; 96.7% identity (96.7% similar) in 333 aa overlap (1-322:1-333)
10 20 30 40 50 60
pF1KB6 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
130 140 150 160 170 180
190 200 210 220
pF1KB6 TIKICDVGVSLPLDENMT-----------VTDPEACYIGTEPWKPKEAVEENGVITDKAD
:::::::::::::::::: :::::::::::::::::::::::::::::::
NP_001 TIKICDVGVSLPLDENMTAPAFITILLVSVTDPEACYIGTEPWKPKEAVEENGVITDKAD
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 IFAFGLTLWEMMTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFAFGLTLWEMMTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDES
250 260 270 280 290 300
290 300 310 320
pF1KB6 YQKVIELFSVCTNEDPKDRPSAAHIVEALETDV
:::::::::::::::::::::::::::::::::
NP_001 YQKVIELFSVCTNEDPKDRPSAAHIVEALETDV
310 320 330
322 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:00:49 2016 done: Sat Nov 5 08:00:51 2016
Total Scan time: 7.410 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]