FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4323, 326 aa 1>>>pF1KE4323 326 - 326 aa - 326 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.2930+/-0.000332; mu= -9.2734+/- 0.021 mean_var=376.0269+/-76.318, 0's: 0 Z-trim(126.4): 8 B-trim: 0 in 0/59 Lambda= 0.066140 statistics sampled from 52319 (52327) to 52319 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.614), width: 16 Scan time: 10.720 The best scores are: opt bits E(85289) NP_003398 (OMIM: 190700) tristetraprolin [Homo sap ( 332) 2313 233.6 4.4e-61 NP_004917 (OMIM: 601064) zinc finger protein 36, C ( 338) 509 61.5 3e-09 NP_001231627 (OMIM: 601064) zinc finger protein 36 ( 338) 509 61.5 3e-09 NP_001231630 (OMIM: 601064) zinc finger protein 36 ( 407) 509 61.5 3.4e-09 NP_008818 (OMIM: 612053) zinc finger protein 36, C ( 494) 455 56.5 1.4e-07 >>NP_003398 (OMIM: 190700) tristetraprolin [Homo sapiens (332 aa) initn: 2313 init1: 2313 opt: 2313 Z-score: 1217.6 bits: 233.6 E(85289): 4.4e-61 Smith-Waterman score: 2313; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:7-332) 10 20 30 40 50 pF1KE4 MDLTAIYESLLSLSPDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRL :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MANRYTMDLTAIYESLLSLSPDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 PGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 PGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 SGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 SGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAA 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE4 PGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 PGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSA 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE4 APGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 APGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGS 250 260 270 280 290 300 300 310 320 pF1KE4 DSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE :::::::::::::::::::::::::::::::: NP_003 DSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE 310 320 330 >>NP_004917 (OMIM: 601064) zinc finger protein 36, C3H1 (338 aa) initn: 494 init1: 377 opt: 509 Z-score: 287.2 bits: 61.5 E(85289): 3e-09 Smith-Waterman score: 530; 40.2% identity (56.0% similar) in 266 aa overlap (84-326:95-337) 60 70 80 90 100 110 pF1KE4 LPGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFS : .: :. .: . ... ::::::::: : NP_004 NQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 ESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLA :.: :.:: :::::::. :::. .::::::::::. :. : :::: ::::::: : : NP_004 ENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRA 130 140 150 160 170 180 180 190 200 210 220 pF1KE4 APG------HPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPL : : :..:.::.:.::. :. :: ::.: ::: : NP_004 LAGARDLSADRPRLQHSFSFAGFPSAAATAAAT-GLLD--------SPTSITPPP---IL 190 200 210 220 230 230 240 250 260 270 pF1KE4 SPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGG-----LVRT----------- : . . ..: : . .: :. : :: : : NP_004 SADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSP 240 250 260 270 280 290 280 290 300 310 320 pF1KE4 PSVQSLGSDPDEY-ASSGSSLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE :: :. :: . : .::.:: .:::::... . ::::::.:.:.:. NP_004 PSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNS-----------RRLPIFSRLSISDD 300 310 320 330 >>NP_001231627 (OMIM: 601064) zinc finger protein 36, C3 (338 aa) initn: 494 init1: 377 opt: 509 Z-score: 287.2 bits: 61.5 E(85289): 3e-09 Smith-Waterman score: 530; 40.2% identity (56.0% similar) in 266 aa overlap (84-326:95-337) 60 70 80 90 100 110 pF1KE4 LPGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFS : .: :. .: . ... ::::::::: : NP_001 NQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 ESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLA :.: :.:: :::::::. :::. .::::::::::. :. : :::: ::::::: : : NP_001 ENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRA 130 140 150 160 170 180 180 190 200 210 220 pF1KE4 APG------HPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPL : : :..:.::.:.::. :. :: ::.: ::: : NP_001 LAGARDLSADRPRLQHSFSFAGFPSAAATAAAT-GLLD--------SPTSITPPP---IL 190 200 210 220 230 230 240 250 260 270 pF1KE4 SPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGG-----LVRT----------- : . . ..: : . .: :. : :: : : NP_001 SADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSP 240 250 260 270 280 290 280 290 300 310 320 pF1KE4 PSVQSLGSDPDEY-ASSGSSLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE :: :. :: . : .::.:: .:::::... . ::::::.:.:.:. NP_001 PSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNS-----------RRLPIFSRLSISDD 300 310 320 330 >>NP_001231630 (OMIM: 601064) zinc finger protein 36, C3 (407 aa) initn: 494 init1: 377 opt: 509 Z-score: 286.1 bits: 61.5 E(85289): 3.4e-09 Smith-Waterman score: 530; 40.2% identity (56.0% similar) in 266 aa overlap (84-326:164-406) 60 70 80 90 100 110 pF1KE4 LPGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFS : .: :. .: . ... ::::::::: : NP_001 NQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFE 140 150 160 170 180 190 120 130 140 150 160 170 pF1KE4 ESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLA :.: :.:: :::::::. :::. .::::::::::. :. : :::: ::::::: : : NP_001 ENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRA 200 210 220 230 240 250 180 190 200 210 220 pF1KE4 APG------HPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPL : : :..:.::.:.::. :. :: ::.: ::: : NP_001 LAGARDLSADRPRLQHSFSFAGFPSAAATAAAT-GLLD--------SPTSITPPP---IL 260 270 280 290 300 230 240 250 260 270 pF1KE4 SPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGG-----LVRT----------- : . . ..: : . .: :. : :: : : NP_001 SADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSP 310 320 330 340 350 360 280 290 300 310 320 pF1KE4 PSVQSLGSDPDEY-ASSGSSLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE :: :. :: . : .::.:: .:::::... . ::::::.:.:.:. NP_001 PSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNS-----------RRLPIFSRLSISDD 370 380 390 400 >>NP_008818 (OMIM: 612053) zinc finger protein 36, C3H1 (494 aa) initn: 440 init1: 384 opt: 455 Z-score: 257.1 bits: 56.5 E(85289): 1.4e-07 Smith-Waterman score: 499; 45.6% identity (60.1% similar) in 193 aa overlap (102-267:152-339) 80 90 100 110 120 130 pF1KE4 PPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLG .:::::::: : ::: :.:: :::::::. NP_008 RSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFH 130 140 150 160 170 180 140 150 160 170 pF1KE4 ELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAP---------------- :::. .::::::::::. :. : :::: ::::::: .: :: NP_008 ELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRDA 190 200 210 220 230 240 180 190 200 210 220 pF1KE4 ---GHP----PVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSS-SPPPPGDLPL : : : :..:.::::.:::.. :: :: .: : .: :.: .::::. NP_008 LHLGFPREPRPKLHHSLSFSGFPSGHHQ--PPGGLESPLLLDS---PTSRTPPPPSCSSA 250 260 270 280 290 230 240 250 260 270 280 pF1KE4 SPSAFSAAP-GTPLARRDPT--PVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEY : . ::. .. : :. :.:: : :. .. :: NP_008 SSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSA 300 310 320 330 340 350 290 300 310 320 pF1KE4 ASSGSSLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE NP_008 SCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSAT 360 370 380 390 400 410 326 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 06:44:34 2016 done: Thu Nov 3 06:44:35 2016 Total Scan time: 10.720 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]