Result of FASTA (omim) for
pFN21AE4344
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4344, 360 aa
1>>>pF1KE4344 360 - 360 aa - 360 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6691+/-0.000351; mu= 1.9822+/- 0.022
mean_var=157.1226+/-31.196, 0's: 0 Z-trim(119.1): 29 B-trim: 0 in 0/61
Lambda= 0.102319
statistics sampled from 32781 (32810) to 32781 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.385), width: 16
Scan time: 9.160
The best scores are: opt bits E(85289)
NP_835366 (OMIM: 300067,300121) neuronal migration ( 360) 2369 361.1 2.2e-99
NP_835364 (OMIM: 300067,300121) neuronal migration ( 360) 2369 361.1 2.2e-99
NP_000546 (OMIM: 300067,300121) neuronal migration ( 441) 2369 361.1 2.7e-99
XP_011529180 (OMIM: 300067,300121) PREDICTED: neur ( 361) 2357 359.3 7.7e-99
NP_835365 (OMIM: 300067,300121) neuronal migration ( 365) 2349 358.1 1.8e-98
NP_001182482 (OMIM: 300067,300121) neuronal migrat ( 366) 2337 356.3 6e-98
XP_016884801 (OMIM: 300067,300121) PREDICTED: neur ( 366) 2337 356.3 6e-98
XP_011529181 (OMIM: 300067,300121) PREDICTED: neur ( 324) 2055 314.7 1.8e-85
XP_011529182 (OMIM: 300067,300121) PREDICTED: neur ( 319) 2048 313.7 3.7e-85
XP_016876337 (OMIM: 604742) PREDICTED: serine/thre ( 363) 1762 271.5 2.1e-72
XP_016876336 (OMIM: 604742) PREDICTED: serine/thre ( 708) 1678 259.2 2.1e-68
NP_004725 (OMIM: 604742) serine/threonine-protein ( 729) 1678 259.2 2.1e-68
NP_001317000 (OMIM: 604742) serine/threonine-prote ( 740) 1678 259.2 2.2e-68
NP_001317001 (OMIM: 604742) serine/threonine-prote ( 740) 1678 259.2 2.2e-68
XP_016863322 (OMIM: 613166) PREDICTED: serine/thre ( 694) 1518 235.6 2.6e-61
XP_016863321 (OMIM: 613166) PREDICTED: serine/thre ( 717) 1518 235.6 2.7e-61
NP_001035351 (OMIM: 613166) serine/threonine-prote ( 783) 1518 235.6 2.9e-61
XP_005262842 (OMIM: 613166) PREDICTED: serine/thre ( 782) 1516 235.3 3.6e-61
NP_001035350 (OMIM: 613166) serine/threonine-prote ( 766) 1448 225.2 3.7e-58
XP_005262843 (OMIM: 613166) PREDICTED: serine/thre ( 765) 1446 224.9 4.5e-58
NP_001182539 (OMIM: 605755,610212,610212,616217) d ( 476) 324 59.2 2.1e-08
NP_057440 (OMIM: 605755,610212,610212,616217) doub ( 476) 324 59.2 2.1e-08
XP_016869211 (OMIM: 180100,603937) PREDICTED: oxyg (2156) 290 54.5 2.7e-06
NP_006260 (OMIM: 180100,603937) oxygen-regulated p (2156) 290 54.5 2.7e-06
XP_016869210 (OMIM: 180100,603937) PREDICTED: oxyg (2163) 290 54.5 2.7e-06
NP_001182359 (OMIM: 604742) serine/threonine-prote ( 56) 226 44.4 7.3e-05
>>NP_835366 (OMIM: 300067,300121) neuronal migration pro (360 aa)
initn: 2369 init1: 2369 opt: 2369 Z-score: 1905.1 bits: 361.1 E(85289): 2.2e-99
Smith-Waterman score: 2369; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)
10 20 30 40 50 60
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
310 320 330 340 350 360
>>NP_835364 (OMIM: 300067,300121) neuronal migration pro (360 aa)
initn: 2369 init1: 2369 opt: 2369 Z-score: 1905.1 bits: 361.1 E(85289): 2.2e-99
Smith-Waterman score: 2369; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)
10 20 30 40 50 60
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
310 320 330 340 350 360
>>NP_000546 (OMIM: 300067,300121) neuronal migration pro (441 aa)
initn: 2369 init1: 2369 opt: 2369 Z-score: 1903.7 bits: 361.1 E(85289): 2.7e-99
Smith-Waterman score: 2369; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:82-441)
10 20 30
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPT
::::::::::::::::::::::::::::::
NP_000 CEETDASFNVFSPKFQFDRSHCQSLRFHQNMELDFGHFDERDKTSRNMRGSRMNGLPSPT
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE4 HSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRS
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE4 LSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNV
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE4 KTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQV
240 250 260 270 280 290
220 230 240 250 260 270
pF1KE4 LTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENE
300 310 320 330 340 350
280 290 300 310 320 330
pF1KE4 CRVMKGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CRVMKGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPIS
360 370 380 390 400 410
340 350 360
pF1KE4 TPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
::::::::::::::::::::::::::::::
NP_000 TPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
420 430 440
>>XP_011529180 (OMIM: 300067,300121) PREDICTED: neuronal (361 aa)
initn: 2355 init1: 2251 opt: 2357 Z-score: 1895.5 bits: 359.3 E(85289): 7.7e-99
Smith-Waterman score: 2357; 99.7% identity (99.7% similar) in 361 aa overlap (1-360:1-361)
10 20 30 40 50 60
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
250 260 270 280 290 300
310 320 330 340 350
pF1KE4 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHK-DLYLPLSLDDSDSLGDS
:::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
XP_011 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKVDLYLPLSLDDSDSLGDS
310 320 330 340 350 360
360
pF1KE4 M
:
XP_011 M
>>NP_835365 (OMIM: 300067,300121) neuronal migration pro (365 aa)
initn: 2086 init1: 2060 opt: 2349 Z-score: 1889.0 bits: 358.1 E(85289): 1.8e-98
Smith-Waterman score: 2349; 98.6% identity (98.6% similar) in 365 aa overlap (1-360:1-365)
10 20 30 40 50 60
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
250 260 270 280 290 300
310 320 330 340 350
pF1KE4 MRRSKSPADS-----ANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::
NP_835 MRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS
310 320 330 340 350 360
360
pF1KE4 LGDSM
:::::
NP_835 LGDSM
>>NP_001182482 (OMIM: 300067,300121) neuronal migration (366 aa)
initn: 2164 init1: 2060 opt: 2337 Z-score: 1879.4 bits: 356.3 E(85289): 6e-98
Smith-Waterman score: 2337; 98.4% identity (98.4% similar) in 366 aa overlap (1-360:1-366)
10 20 30 40 50 60
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
250 260 270 280 290 300
310 320 330 340 350
pF1KE4 MRRSKSPADS-----ANGTSSSQLSTPKSKQSPISTPTSPGSLRKHK-DLYLPLSLDDSD
:::::::::: :::::::::::::::::::::::::::::::: ::::::::::::
NP_001 MRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKVDLYLPLSLDDSD
310 320 330 340 350 360
360
pF1KE4 SLGDSM
::::::
NP_001 SLGDSM
>>XP_016884801 (OMIM: 300067,300121) PREDICTED: neuronal (366 aa)
initn: 2164 init1: 2060 opt: 2337 Z-score: 1879.4 bits: 356.3 E(85289): 6e-98
Smith-Waterman score: 2337; 98.4% identity (98.4% similar) in 366 aa overlap (1-360:1-366)
10 20 30 40 50 60
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
250 260 270 280 290 300
310 320 330 340 350
pF1KE4 MRRSKSPADS-----ANGTSSSQLSTPKSKQSPISTPTSPGSLRKHK-DLYLPLSLDDSD
:::::::::: :::::::::::::::::::::::::::::::: ::::::::::::
XP_016 MRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKVDLYLPLSLDDSD
310 320 330 340 350 360
360
pF1KE4 SLGDSM
::::::
XP_016 SLGDSM
>>XP_011529181 (OMIM: 300067,300121) PREDICTED: neuronal (324 aa)
initn: 2081 init1: 2055 opt: 2055 Z-score: 1655.3 bits: 314.7 E(85289): 1.8e-85
Smith-Waterman score: 2055; 99.7% identity (100.0% similar) in 312 aa overlap (1-312:1-312)
10 20 30 40 50 60
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
::::::::::.:
XP_011 MRRSKSPADSGNDQDGPVPASVLG
310 320
>>XP_011529182 (OMIM: 300067,300121) PREDICTED: neuronal (319 aa)
initn: 2048 init1: 2048 opt: 2048 Z-score: 1649.8 bits: 313.7 E(85289): 3.7e-85
Smith-Waterman score: 2048; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)
10 20 30 40 50 60
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
::::::::::
XP_011 MRRSKSPADSGPVPASVLG
310
>>XP_016876337 (OMIM: 604742) PREDICTED: serine/threonin (363 aa)
initn: 1204 init1: 846 opt: 1762 Z-score: 1420.8 bits: 271.5 E(85289): 2.1e-72
Smith-Waterman score: 1762; 74.2% identity (89.8% similar) in 364 aa overlap (1-360:7-363)
10 20 30 40 50
pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKK
:::. :::::::..: ::::.:::::::::::::::::::::.::.::::::
XP_016 MSFGRDMELE--HFDERDKAQRYSRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKK
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 VRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIG
:::::::::::::::::.: ::::::.::::::::.::::.::::::: :::::: .::.
XP_016 VRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKIS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 SMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSA--QARE
:.:.: :::::::.: . :::.::::::::::::::::.. .: .:::..... ..::
XP_016 SLDQLVEGESYVCGSIEPFKKLEYTKNVNPNWSVNVKTTSASRAVSSLATAKGSPSEVRE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 NKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLD
::::.:::::::::::::::::::.::::::::::::::::::.::::..::::.:::::
XP_016 NKDFIRPKLVTIIRSGVKPRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLD
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 GKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQK
:::: ::.:::::::.::::::::::: :::: :::.::::.: .:. : . . ..
XP_016 GKQVMCLQDFFGDDDIFIACGPEKFRY-QDDFLLDESECRVVK----STSYTKIASSSRR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE4 TSAKSPGPMRRSKSPAD--SANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSL
...::::: :::::::. :.::: .::::::.: .:: .:::::::::..::: :::
XP_016 STTKSPGPSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSPSPTSPGSLRKQRDLYRPLSS
300 310 320 330 340 350
360
pF1KE4 DDSDSLGDSM
:: ::.:::.
XP_016 DDLDSVGDSV
360
360 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:19:41 2016 done: Thu Nov 3 08:19:42 2016
Total Scan time: 9.160 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]