FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4344, 360 aa 1>>>pF1KE4344 360 - 360 aa - 360 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2098+/-0.000911; mu= 4.8044+/- 0.056 mean_var=156.4374+/-30.974, 0's: 0 Z-trim(111.2): 15 B-trim: 0 in 0/52 Lambda= 0.102543 statistics sampled from 12205 (12219) to 12205 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.375), width: 16 Scan time: 3.000 The best scores are: opt bits E(32554) CCDS14557.1 DCX gene_id:1641|Hs108|chrX ( 360) 2369 361.8 5e-100 CCDS14558.1 DCX gene_id:1641|Hs108|chrX ( 365) 2349 358.9 4e-99 CCDS83483.1 DCX gene_id:1641|Hs108|chrX ( 366) 2337 357.1 1.4e-98 CCDS9354.1 DCLK1 gene_id:9201|Hs108|chr13 ( 729) 1678 259.8 5.4e-69 CCDS81762.1 DCLK1 gene_id:9201|Hs108|chr13 ( 740) 1678 259.8 5.5e-69 CCDS47142.2 DCLK2 gene_id:166614|Hs108|chr4 ( 783) 1518 236.1 7.7e-62 CCDS34076.1 DCLK2 gene_id:166614|Hs108|chr4 ( 766) 1448 225.8 9.9e-59 >>CCDS14557.1 DCX gene_id:1641|Hs108|chrX (360 aa) initn: 2369 init1: 2369 opt: 2369 Z-score: 1909.2 bits: 361.8 E(32554): 5e-100 Smith-Waterman score: 2369; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360) 10 20 30 40 50 60 pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 310 320 330 340 350 360 >>CCDS14558.1 DCX gene_id:1641|Hs108|chrX (365 aa) initn: 2086 init1: 2060 opt: 2349 Z-score: 1893.1 bits: 358.9 E(32554): 4e-99 Smith-Waterman score: 2349; 98.6% identity (98.6% similar) in 365 aa overlap (1-360:1-365) 10 20 30 40 50 60 pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 MRRSKSPADS-----ANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS :::::::::: ::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS 310 320 330 340 350 360 360 pF1KE4 LGDSM ::::: CCDS14 LGDSM >>CCDS83483.1 DCX gene_id:1641|Hs108|chrX (366 aa) initn: 2164 init1: 2060 opt: 2337 Z-score: 1883.5 bits: 357.1 E(32554): 1.4e-98 Smith-Waterman score: 2337; 98.4% identity (98.4% similar) in 366 aa overlap (1-360:1-366) 10 20 30 40 50 60 pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 MRRSKSPADS-----ANGTSSSQLSTPKSKQSPISTPTSPGSLRKHK-DLYLPLSLDDSD :::::::::: :::::::::::::::::::::::::::::::: :::::::::::: CCDS83 MRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKVDLYLPLSLDDSD 310 320 330 340 350 360 360 pF1KE4 SLGDSM :::::: CCDS83 SLGDSM >>CCDS9354.1 DCLK1 gene_id:9201|Hs108|chr13 (729 aa) initn: 1120 init1: 846 opt: 1678 Z-score: 1352.1 bits: 259.8 E(32554): 5.4e-69 Smith-Waterman score: 1678; 74.3% identity (90.2% similar) in 346 aa overlap (1-342:7-345) 10 20 30 40 50 pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKK :::. :::::::..: ::::.:::::::::::::::::::::.::.:::::: CCDS93 MSFGRDMELE--HFDERDKAQRYSRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKK 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 VRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIG :::::::::::::::::.: ::::::.::::::::.::::.::::::: :::::: .::. CCDS93 VRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKIS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 SMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSA--QARE :.:.: :::::::.: . :::.::::::::::::::::.. .: .:::..... ..:: CCDS93 SLDQLVEGESYVCGSIEPFKKLEYTKNVNPNWSVNVKTTSASRAVSSLATAKGSPSEVRE 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 NKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLD ::::.:::::::::::::::::::.::::::::::::::::::.::::..::::.::::: CCDS93 NKDFIRPKLVTIIRSGVKPRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLD 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 GKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQK :::: ::.:::::::.::::::::::: :::: :::.::::.: .:. : . . .. CCDS93 GKQVMCLQDFFGDDDIFIACGPEKFRY-QDDFLLDESECRVVK----STSYTKIASSSRR 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 TSAKSPGPMRRSKSPAD--SANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSL ...::::: :::::::. :.::: .::::::.: .:: .:::::::::.. CCDS93 STTKSPGPSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSPSPTSPGSLRKQRSSQHGGSS 300 310 320 330 340 350 360 pF1KE4 DDSDSLGDSM CCDS93 TSLASTKVCSSMDENDGPGEEVSEEGFQIPATITERYKVGRTIGDGNFAVVKECVERSTA 360 370 380 390 400 410 >>CCDS81762.1 DCLK1 gene_id:9201|Hs108|chr13 (740 aa) initn: 1120 init1: 846 opt: 1678 Z-score: 1352.0 bits: 259.8 E(32554): 5.5e-69 Smith-Waterman score: 1678; 74.3% identity (90.2% similar) in 346 aa overlap (1-342:7-345) 10 20 30 40 50 pF1KE4 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKK :::. :::::::..: ::::.:::::::::::::::::::::.::.:::::: CCDS81 MSFGRDMELE--HFDERDKAQRYSRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKK 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 VRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIG :::::::::::::::::.: ::::::.::::::::.::::.::::::: :::::: .::. CCDS81 VRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKIS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 SMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSA--QARE :.:.: :::::::.: . :::.::::::::::::::::.. .: .:::..... ..:: CCDS81 SLDQLVEGESYVCGSIEPFKKLEYTKNVNPNWSVNVKTTSASRAVSSLATAKGSPSEVRE 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 NKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLD ::::.:::::::::::::::::::.::::::::::::::::::.::::..::::.::::: CCDS81 NKDFIRPKLVTIIRSGVKPRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLD 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 GKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQK :::: ::.:::::::.::::::::::: :::: :::.::::.: .:. : . . .. CCDS81 GKQVMCLQDFFGDDDIFIACGPEKFRY-QDDFLLDESECRVVK----STSYTKIASSSRR 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 TSAKSPGPMRRSKSPAD--SANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSL ...::::: :::::::. :.::: .::::::.: .:: .:::::::::.. CCDS81 STTKSPGPSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSPSPTSPGSLRKQRSSQHGGSS 300 310 320 330 340 350 360 pF1KE4 DDSDSLGDSM CCDS81 TSLASTKVCSSMDENDGPGEEVSEEGFQIPATITERYKVGRTIGDGNFAVVKECVERSTA 360 370 380 390 400 410 >>CCDS47142.2 DCLK2 gene_id:166614|Hs108|chr4 (783 aa) initn: 1659 init1: 721 opt: 1518 Z-score: 1223.7 bits: 236.1 E(32554): 7.7e-62 Smith-Waterman score: 1532; 66.7% identity (81.3% similar) in 375 aa overlap (3-344:7-371) 10 20 30 40 pF1KE4 MELDFGHFDERDKTSR--NMRGS------------RMNGL-PSPTHSAHCSFYRTR ... ::.:::: : . ::. . ::: :::.::::::::::: CCDS47 MASTRSIELEHFEERDKRPRPGSRRGAPSSSGGSSSSGPKGNGLIPSPAHSAHCSFYRTR 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 TLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGV ::::::.::::::.::::::::::::.:.:.:::::::::::: .::::::::.:::::: CCDS47 TLQALSSEKKAKKARFYRNGDRYFKGLVFAISSDRFRSFDALLIELTRSLSDNVNLPQGV 70 80 90 100 110 120 110 120 130 140 150 pF1KE4 RYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVK--TSANMKAP : :::::::::. :.::: :::::::.:.. :.::.::::.:::::::.: :: . : CCDS47 RTIYTIDGSRKVTSLDELLEGESYVCASNEPFRKVDYTKNINPNWSVNIKGGTSRALAA- 130 140 150 160 170 160 170 180 190 200 210 pF1KE4 QSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIK ::: .....:.:::..:::::.::::::::::::.:::::::::::::::::::::: CCDS47 ---ASSVKSEVKESKDFIKPKLVTVIRSGVKPRKAVRILLNKKTAHSFEQVLTDITEAIK 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE4 LETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPS :..::::.: ::::::::::.:::::::::::::::::::::::: ::..::::.:.. : CCDS47 LDSGVVKRLCTLDGKQVTCLQDFFGDDDVFIACGPEKFRYAQDDFVLDHSECRVLKSSYS 240 250 260 270 280 290 280 290 300 310 320 pF1KE4 ATAGPKASPTPQKTSAKSPGPMRRSKSPAD--------SA--------NGTSSSQLSTPK ... : : ..::::: :::::::. :: ::: :::::::: CCDS47 RSSAVKYS------GSKSPGPSRRSKSPASVKRGGHYSSAYSTAKSPVNGTPSSQLSTPK 300 310 320 330 340 350 330 340 350 360 pF1KE4 SKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM : .: :.::::::.: :.. CCDS47 STKSSSSSPTSPGSFRGLKQISAHGRSSSNVNGGPELDRCISPEGVNGNRCSESSTLLEK 360 370 380 390 400 410 >>CCDS34076.1 DCLK2 gene_id:166614|Hs108|chr4 (766 aa) initn: 1654 init1: 719 opt: 1448 Z-score: 1167.9 bits: 225.8 E(32554): 9.9e-59 Smith-Waterman score: 1567; 69.4% identity (84.7% similar) in 359 aa overlap (3-344:7-354) 10 20 30 40 pF1KE4 MELDFGHFDERDKTSR--NMRGS------------RMNGL-PSPTHSAHCSFYRTR ... ::.:::: : . ::. . ::: :::.::::::::::: CCDS34 MASTRSIELEHFEERDKRPRPGSRRGAPSSSGGSSSSGPKGNGLIPSPAHSAHCSFYRTR 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 TLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGV ::::::.::::::.::::::::::::.:.:.:::::::::::: .::::::::.:::::: CCDS34 TLQALSSEKKAKKARFYRNGDRYFKGLVFAISSDRFRSFDALLIELTRSLSDNVNLPQGV 70 80 90 100 110 120 110 120 130 140 150 pF1KE4 RYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVK--TSANMKAP : :::::::::. :.::: :::::::.:.. :.::.::::.:::::::.: :: . : CCDS34 RTIYTIDGSRKVTSLDELLEGESYVCASNEPFRKVDYTKNINPNWSVNIKGGTSRALAA- 130 140 150 160 170 160 170 180 190 200 210 pF1KE4 QSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIK ::: .....:.:::..:::::.::::::::::::.:::::::::::::::::::::: CCDS34 ---ASSVKSEVKESKDFIKPKLVTVIRSGVKPRKAVRILLNKKTAHSFEQVLTDITEAIK 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE4 LETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPS :..::::.: ::::::::::.:::::::::::::::::::::::: ::..::::.:.. : CCDS34 LDSGVVKRLCTLDGKQVTCLQDFFGDDDVFIACGPEKFRYAQDDFVLDHSECRVLKSSYS 240 250 260 270 280 290 280 290 300 310 320 330 pF1KE4 ATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLR ... : : ..::::: ::::::: :.::: ::::::::: .: :.::::::.: CCDS34 RSSAVKYS------GSKSPGPSRRSKSPA-SVNGTPSSQLSTPKSTKSSSSSPTSPGSFR 300 310 320 330 340 340 350 360 pF1KE4 KHKDLYLPLSLDDSDSLGDSM :.. CCDS34 GLKQISAHGRSSSNVNGGPELDRCISPEGVNGNRCSESSTLLEKYKIGKVIGDGNFAVVK 350 360 370 380 390 400 360 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 08:19:40 2016 done: Thu Nov 3 08:19:40 2016 Total Scan time: 3.000 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]