FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3232, 540 aa 1>>>pF1KE3232 540 - 540 aa - 540 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8374+/-0.00102; mu= 11.9699+/- 0.061 mean_var=138.0800+/-27.849, 0's: 0 Z-trim(108.2): 40 B-trim: 0 in 0/53 Lambda= 0.109146 statistics sampled from 10008 (10027) to 10008 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.308), width: 16 Scan time: 3.520 The best scores are: opt bits E(32554) CCDS47196.1 NPR3 gene_id:4883|Hs108|chr5 ( 540) 3593 577.8 1.1e-164 CCDS56357.1 NPR3 gene_id:4883|Hs108|chr5 ( 541) 3567 573.7 1.9e-163 CCDS56356.1 NPR3 gene_id:4883|Hs108|chr5 ( 324) 1884 308.5 7.7e-84 CCDS6590.1 NPR2 gene_id:4882|Hs108|chr9 (1047) 509 92.4 2.8e-18 CCDS1051.1 NPR1 gene_id:4881|Hs108|chr1 (1061) 478 87.5 8.3e-17 >>CCDS47196.1 NPR3 gene_id:4883|Hs108|chr5 (540 aa) initn: 3593 init1: 3593 opt: 3593 Z-score: 3070.1 bits: 577.8 E(32554): 1.1e-164 Smith-Waterman score: 3593; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540) 10 20 30 40 50 60 pF1KE3 MPSLLVLTFSPCVLLGWALLAGGTGGGGVGGGGGGAGIGGGRQEREALPPQKIEVLVLLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MPSLLVLTFSPCVLLGWALLAGGTGGGGVGGGGGGAGIGGGRQEREALPPQKIEVLVLLP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 QDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 AAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 YAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 YAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 DLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 SWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 SWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 FHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 FHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 MTDVEAGTQEVIGDYFGKEGRFEMRPNVKYPWGPLKLRIDENRIVEHTNSSPCKSCGLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MTDVEAGTQEVIGDYFGKEGRFEMRPNVKYPWGPLKLRIDENRIVEHTNSSPCKSCGLEE 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 SAVTGIVVGALLGAGLLMAFYFFRKKYRITIERRTQQEESNLGKHRELREDSIRSHFSVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 SAVTGIVVGALLGAGLLMAFYFFRKKYRITIERRTQQEESNLGKHRELREDSIRSHFSVA 490 500 510 520 530 540 >>CCDS56357.1 NPR3 gene_id:4883|Hs108|chr5 (541 aa) initn: 3248 init1: 3186 opt: 3567 Z-score: 3047.9 bits: 573.7 E(32554): 1.9e-163 Smith-Waterman score: 3567; 99.6% identity (99.6% similar) in 541 aa overlap (1-540:1-541) 10 20 30 40 50 60 pF1KE3 MPSLLVLTFSPCVLLGWALLAGGTGGGGVGGGGGGAGIGGGRQEREALPPQKIEVLVLLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 MPSLLVLTFSPCVLLGWALLAGGTGGGGVGGGGGGAGIGGGRQEREALPPQKIEVLVLLP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 QDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 AAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 YAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 YAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 DLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 SWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 SWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 FHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 FHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIA 370 380 390 400 410 420 430 440 450 460 470 pF1KE3 MTDVEAGTQEVIGDYFGKEGRFEMRPNVKYPWGPLKLRIDENRIVEHTNSSPCKSCG-LE ::::::::::::::::::::::::::::::::::::::::::::::::::::::: : :: CCDS56 MTDVEAGTQEVIGDYFGKEGRFEMRPNVKYPWGPLKLRIDENRIVEHTNSSPCKSSGGLE 430 440 450 460 470 480 480 490 500 510 520 530 pF1KE3 ESAVTGIVVGALLGAGLLMAFYFFRKKYRITIERRTQQEESNLGKHRELREDSIRSHFSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 ESAVTGIVVGALLGAGLLMAFYFFRKKYRITIERRTQQEESNLGKHRELREDSIRSHFSV 490 500 510 520 530 540 540 pF1KE3 A : CCDS56 A >>CCDS56356.1 NPR3 gene_id:4883|Hs108|chr5 (324 aa) initn: 1882 init1: 1882 opt: 1884 Z-score: 1618.7 bits: 308.5 E(32554): 7.7e-84 Smith-Waterman score: 1884; 97.9% identity (99.0% similar) in 292 aa overlap (249-540:33-324) 220 230 240 250 260 270 pF1KE3 GVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHG :. .:.:::::::::::::::::::::: CCDS56 PSALGPWSLFPDLAPRDQEGQVLAPRRCFRRECGQNEKVVIMCASSDTIRSIMLVAHRHG 10 20 30 40 50 60 280 290 300 310 320 330 pF1KE3 MTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 MTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSME 70 80 90 100 110 120 340 350 360 370 380 390 pF1KE3 VKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 VKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE 130 140 150 160 170 180 400 410 420 430 440 450 pF1KE3 GIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEMRPNVKYPWGPLKLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 GIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEMRPNVKYPWGPLKLR 190 200 210 220 230 240 460 470 480 490 500 510 pF1KE3 IDENRIVEHTNSSPCKSCGLEESAVTGIVVGALLGAGLLMAFYFFRKKYRITIERRTQQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 IDENRIVEHTNSSPCKSCGLEESAVTGIVVGALLGAGLLMAFYFFRKKYRITIERRTQQE 250 260 270 280 290 300 520 530 540 pF1KE3 ESNLGKHRELREDSIRSHFSVA :::::::::::::::::::::: CCDS56 ESNLGKHRELREDSIRSHFSVA 310 320 >>CCDS6590.1 NPR2 gene_id:4882|Hs108|chr9 (1047 aa) initn: 546 init1: 272 opt: 509 Z-score: 441.7 bits: 92.4 E(32554): 2.8e-18 Smith-Waterman score: 728; 30.9% identity (60.7% similar) in 512 aa overlap (36-523:11-502) 10 20 30 40 50 60 pF1KE3 VLTFSPCVLLGWALLAGGTGGGGVGGGGGGAGIGGGRQEREALPP--QKIEVLVLLPQDD :...:: . :: ... . :.::. . CCDS65 MALPSLLLLVAALAGGVR-----PPGARNLTLAVVLPEHN 10 20 30 70 80 90 100 110 120 pF1KE3 -SYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVA :: .. :: ::. : ::. : : :: :: . .. :.. : .: :: CCDS65 LSYAWAWPRVGPAVALA---VEALG---RALPVDLRFVSSELEGACSEYLAPLSAVD--- 40 50 60 70 80 130 140 150 160 170 180 pF1KE3 AARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAY :::.::: : : :: :::.:::: ::.:.:::.:.::. :...: :.:..:. CCDS65 LKLYHDPDLLLGPGCVYPAASVARFASHWRLPLLTAGAVASGFSAKNDHYRTLVRTGPSA 90 100 110 120 130 140 190 200 210 220 230 pF1KE3 AKMGEMMLALFRHHHWS-RAALVYSDDKLE-RNCYFTLEGVHEVFQEEGLHTS--IYSFD :.::....: : .:. ::::.: : . . : :::.::: :..: .: .. .:. . CCDS65 PKLGEFVVTLHGHFNWTARAALLYLDARTDDRPHYFTIEGVFEALQGSNLSVQHQVYARE 150 160 170 180 190 200 240 250 260 270 280 290 pF1KE3 ETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSS-- :. .. :.:. :.: .:. . .. :.: :.:...:.:::.:: ...:. : CCDS65 PGGP---EQATHFIRANGRIVYICGPLEMLHEILLQAQRENLTNGDYVFFYLDVFGESLR 210 220 230 240 250 260 300 310 320 330 340 pF1KE3 ---SYGDGS-WK--RGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVK-SSVEKQGL . . : :. : .. ..:.... ..: . .::...:. .. . : :. CCDS65 AGPTRATGRPWQDNRTREQAQALREAFQTVLVITYREPPNPEYQEFQNRLLIRAREDFGV 270 280 290 300 310 320 350 360 370 380 390 400 pF1KE3 NMEDYVNMFVEG-FHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSID .. . .. : :.:.::::. .:.:... : ...:: .:... .: ..:..: : .: CCDS65 ELGPSLMNLIAGCFYDGILLYAEVLNETIQEGGTREDGLRIVEKMQGRRYHGVTGLVVMD 330 340 350 360 370 380 410 420 430 440 450 460 pF1KE3 ANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGR--FEMRPNVKYPWGPLKLRIDENRIV :.:: :: . :: :...: . . : : : . . :: :: :. . CCDS65 KNNDRETDFVLWAMGDLDSGDFQPAAHYSGAEKQIWWTGRP---IPWVKGAPPSDNPPCA 390 400 410 420 430 440 470 480 490 500 510 520 pF1KE3 EHTNSSPCKSCGLEESAVTGIVVGALLGAGLLMAFYFFRK----KYRITIERRTQQEESN .. : . : :.... .: . . .: .::: : .. : . :: . CCDS65 FDLDDPSCDKTPLSTLAIVALGTGITFIMFGVSSFLIFRKLMLEKELASMLWRIRWEELQ 450 460 470 480 490 500 530 540 pF1KE3 LGKHRELREDSIRSHFSVA .: CCDS65 FGNSERYHKGAGSRLTLSLRGSSYGSLMTAHGKYQIFANTGHFKGNVVAIKHVNKKRIEL 510 520 530 540 550 560 >>CCDS1051.1 NPR1 gene_id:4881|Hs108|chr1 (1061 aa) initn: 688 init1: 212 opt: 478 Z-score: 415.2 bits: 87.5 E(32554): 8.3e-17 Smith-Waterman score: 796; 34.5% identity (62.6% similar) in 481 aa overlap (53-512:35-502) 30 40 50 60 70 80 pF1KE3 GTGGGGVGGGGGGAGIGGGRQEREALPPQKIEVLVLLP-QDDSYLFSLTRVRPAIEYALR . : :.:: . :: .: .:: ::.: :: CCDS10 RRPAGSRLRLLLLLLLPPLLLLLRGSHAGNLTVAVVLPLANTSYPWSWARVGPAVELALA 10 20 30 40 50 60 90 100 110 120 130 pF1KE3 SVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVA--AARGAK----PDLILGPV .:.. : : :: ... .:. :: : .: :: : : ..::: CCDS10 QVKA----RPDLLPGWTVRTVLGSSE---NALGVCSDTAAPLAAVDLKWEHNPAVFLGPG 70 80 90 100 110 140 150 160 170 180 190 pF1KE3 CEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHH : ::::::.:...:: .:.:.::: : :: :: ::. ::..:.:::.:... :: :. CCDS10 CVYAAAPVGRFTAHWRVPLLTAGAPALGFGVKD-EYALTTRAGPSYAKLGDFVAALHRRL 120 130 140 150 160 170 200 210 220 230 240 250 pF1KE3 HWSRAALVYSDDKL--ERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLED---IVRN : : ::. . :..:.: .::. ... :. .. .. ..: :: ..:. CCDS10 GWERQALMLYAYRPGDEEHCFFLVEGLFMRVRDR-LNITVDHLEFAED-DLSHYTRLLRT 180 190 200 210 220 230 260 270 280 290 300 pF1KE3 IQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSS-SYGDGS-----WKR . . ::. .:.: :..:..::.: . :. . ::.::....:..: . :.: :.: CCDS10 MPRKGRVIYICSSPDAFRTLMLLALEAGLCGEDYVFFHLDIFGQSLQGGQGPAPRRPWER 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE3 GDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKS-SVEKQGLNMED-YVNMFVEGFH :: .: :.::... . .: .::. .: ..: . :. ...::: :: . .:: CCDS10 GDGQDVSARQAFQAAKIITYKDPDNPEYLEFLKQLKHLAYEQFNFTMEDGLVNTIPASFH 300 310 320 330 340 350 370 380 390 400 410 420 pF1KE3 DAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMT :..:::. :. :.: : . :: .: :. :::.:.:..: ..::..::: :::. : CCDS10 DGLLLYIQAVTETLAHGGTVTDGENITQRMWNRSFQGVTGYLKIDSSGDRETDFSLWDM- 360 370 380 390 400 410 430 440 450 460 470 480 pF1KE3 DVEAGTQEVIGDYFGKEGRFEMRPNVKYPWGPLKLRIDENRIVEHTNSSP-CKSCGLEES : : :. .:. .: : .. . : : :: . : .: :.. : CCDS10 DPENGAFRVVLNYNGTSQELVAVSGRKLNW-PLGYPPPDIPKCGFDNEDPACNQDHLSTL 420 430 440 450 460 470 490 500 510 520 530 540 pF1KE3 AVTGIVVGALLGAGLLMAFYFFRKKYRITIERRTQQEESNLGKHRELREDSIRSHFSVA : ..: :.: :.:.. .:. .:... : CCDS10 EVLALV-GSLSLLGILIVSFFIYRKMQLEKELASELWRVRWEDVEPSSLERHLRSAGSRL 480 490 500 510 520 530 CCDS10 TLSGRGSNYGSLLTTEGQFQVFAKTAYYKGNLVAVKRVNRKRIELTRKVLFELKHMRDVQ 540 550 560 570 580 590 540 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 08:59:24 2016 done: Thu Nov 3 08:59:25 2016 Total Scan time: 3.520 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]