FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3155, 373 aa 1>>>pF1KE3155 373 - 373 aa - 373 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3028+/-0.000424; mu= 16.6202+/- 0.026 mean_var=64.1971+/-13.111, 0's: 0 Z-trim(109.8): 15 B-trim: 64 in 1/48 Lambda= 0.160072 statistics sampled from 17978 (17989) to 17978 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.58), E-opt: 0.2 (0.211), width: 16 Scan time: 7.980 The best scores are: opt bits E(85289) NP_001013641 (OMIM: 614681) hydroxylysine kinase i ( 373) 2437 571.9 8.4e-163 XP_016877411 (OMIM: 614681) PREDICTED: hydroxylysi ( 262) 1433 339.9 3.9e-93 NP_001077081 (OMIM: 614681) hydroxylysine kinase i ( 220) 1420 336.9 2.7e-92 XP_011519533 (OMIM: 614681) PREDICTED: hydroxylysi ( 168) 1010 242.1 6.8e-64 >>NP_001013641 (OMIM: 614681) hydroxylysine kinase isofo (373 aa) initn: 2437 init1: 2437 opt: 2437 Z-score: 3043.8 bits: 571.9 E(85289): 8.4e-163 Smith-Waterman score: 2437; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373) 10 20 30 40 50 60 pF1KE3 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 SGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGFESITPLTAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGFESITPLTAV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 EKGALFLLVCSRFCQSLVMAAYSCQLYPENKDYLMVTAKTGWKHLQQMFDMGQKAVEEIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EKGALFLLVCSRFCQSLVMAAYSCQLYPENKDYLMVTAKTGWKHLQQMFDMGQKAVEEIW 310 320 330 340 350 360 370 pF1KE3 FETAKSYESGISM ::::::::::::: NP_001 FETAKSYESGISM 370 >>XP_016877411 (OMIM: 614681) PREDICTED: hydroxylysine k (262 aa) initn: 1433 init1: 1433 opt: 1433 Z-score: 1793.0 bits: 339.9 E(85289): 3.9e-93 Smith-Waterman score: 1433; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221) 10 20 30 40 50 60 pF1KE3 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSA ::::::::::::::::::::::::::::::::::::::::: XP_016 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECCFPFLCYINYAAMNPLVQE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 SGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGFESITPLTAV XP_016 SPNPRNWATQQEVSRGKASITA 250 260 >>NP_001077081 (OMIM: 614681) hydroxylysine kinase isofo (220 aa) initn: 1420 init1: 1420 opt: 1420 Z-score: 1778.0 bits: 336.9 E(85289): 2.7e-92 Smith-Waterman score: 1420; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KE3 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSA :::::::::::::::::::::::::::::::::::::::: NP_001 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRE 190 200 210 220 250 260 270 280 290 300 pF1KE3 SGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGFESITPLTAV >>XP_011519533 (OMIM: 614681) PREDICTED: hydroxylysine k (168 aa) initn: 1008 init1: 1008 opt: 1010 Z-score: 1268.0 bits: 242.1 E(85289): 6.8e-64 Smith-Waterman score: 1010; 96.4% identity (98.2% similar) in 167 aa overlap (1-166:1-167) 10 20 30 40 50 60 pF1KE3 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQR-FHHPKLSSLHRENFIWNLK :::::::::::::::::::::::::::::::::::::::. . ::. XP_011 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQEEIPSPKVK 130 140 150 160 180 190 200 210 220 230 pF1KE3 NVPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKS 373 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 18:15:55 2016 done: Thu Nov 3 18:15:56 2016 Total Scan time: 7.980 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]