FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3040, 177 aa 1>>>pF1KE3040 177 - 177 aa - 177 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6768+/-0.000338; mu= 15.7997+/- 0.021 mean_var=57.8371+/-11.642, 0's: 0 Z-trim(114.5): 41 B-trim: 382 in 1/49 Lambda= 0.168644 statistics sampled from 24416 (24457) to 24416 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.287), width: 16 Scan time: 5.420 The best scores are: opt bits E(85289) NP_937818 (OMIM: 156490,256700) nucleoside diphosp ( 177) 1204 300.8 7.7e-82 NP_000260 (OMIM: 156490,256700) nucleoside diphosp ( 152) 1038 260.3 9.8e-70 NP_001018148 (OMIM: 156491) nucleoside diphosphate ( 152) 928 233.6 1.1e-61 NP_002503 (OMIM: 156491) nucleoside diphosphate ki ( 152) 928 233.6 1.1e-61 NP_001018147 (OMIM: 156491) nucleoside diphosphate ( 152) 928 233.6 1.1e-61 NP_001018149 (OMIM: 156491) nucleoside diphosphate ( 152) 928 233.6 1.1e-61 NP_002504 (OMIM: 601817) nucleoside diphosphate ki ( 169) 726 184.5 7.6e-47 NP_005000 (OMIM: 601818) nucleoside diphosphate ki ( 187) 621 158.9 4e-39 XP_005255389 (OMIM: 601817) PREDICTED: nucleoside ( 165) 553 142.4 3.5e-34 NP_001273364 (OMIM: 601818) nucleoside diphosphate ( 173) 490 127.0 1.5e-29 NP_001273367 (OMIM: 601818) nucleoside diphosphate ( 117) 452 117.7 6.6e-27 NP_001273369 (OMIM: 601818) nucleoside diphosphate ( 117) 452 117.7 6.6e-27 NP_001273368 (OMIM: 601818) nucleoside diphosphate ( 117) 452 117.7 6.6e-27 NP_001273365 (OMIM: 601818) nucleoside diphosphate ( 117) 452 117.7 6.6e-27 NP_001185611 (OMIM: 156491) nucleoside diphosphate ( 82) 439 114.4 4.5e-26 XP_011520805 (OMIM: 601817) PREDICTED: nucleoside ( 170) 332 88.6 5.5e-18 NP_001273362 (OMIM: 601818) nucleoside diphosphate ( 153) 289 78.1 7.1e-15 NP_932076 (OMIM: 613465) nucleoside diphosphate ki ( 340) 245 67.6 2.2e-11 XP_016856588 (OMIM: 613465) PREDICTED: nucleoside ( 367) 245 67.7 2.4e-11 NP_037462 (OMIM: 613465) nucleoside diphosphate ki ( 376) 245 67.7 2.4e-11 NP_001295356 (OMIM: 608294) nucleoside diphosphate ( 186) 223 62.1 5.7e-10 NP_001295355 (OMIM: 608294) nucleoside diphosphate ( 186) 223 62.1 5.7e-10 XP_016861003 (OMIM: 608294) PREDICTED: nucleoside ( 186) 223 62.1 5.7e-10 NP_001295357 (OMIM: 608294) nucleoside diphosphate ( 186) 223 62.1 5.7e-10 XP_016861002 (OMIM: 608294) PREDICTED: nucleoside ( 190) 223 62.1 5.7e-10 NP_005784 (OMIM: 608294) nucleoside diphosphate ki ( 194) 223 62.1 5.8e-10 XP_006714779 (OMIM: 603575) PREDICTED: nucleoside ( 149) 216 60.3 1.5e-09 XP_005272156 (OMIM: 603575) PREDICTED: nucleoside ( 148) 215 60.1 1.8e-09 NP_003542 (OMIM: 603575) nucleoside diphosphate ki ( 212) 215 60.2 2.4e-09 XP_016865434 (OMIM: 603575) PREDICTED: nucleoside ( 278) 215 60.3 3e-09 XP_011520806 (OMIM: 601817) PREDICTED: nucleoside ( 136) 198 55.9 3e-08 NP_001295363 (OMIM: 608294) nucleoside diphosphate ( 141) 185 52.8 2.8e-07 XP_016856589 (OMIM: 613465) PREDICTED: nucleoside ( 252) 164 47.8 1.5e-05 XP_005245163 (OMIM: 613465) PREDICTED: nucleoside ( 252) 164 47.8 1.5e-05 XP_016861007 (OMIM: 608294) PREDICTED: nucleoside ( 111) 152 44.7 6e-05 XP_016861001 (OMIM: 608294) PREDICTED: nucleoside ( 264) 147 43.7 0.00027 XP_016861006 (OMIM: 608294) PREDICTED: nucleoside ( 114) 142 42.3 0.00033 >>NP_937818 (OMIM: 156490,256700) nucleoside diphosphate (177 aa) initn: 1204 init1: 1204 opt: 1204 Z-score: 1590.3 bits: 300.8 E(85289): 7.7e-82 Smith-Waterman score: 1204; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177) 10 20 30 40 50 60 pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_937 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_937 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_937 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 130 140 150 160 170 >>NP_000260 (OMIM: 156490,256700) nucleoside diphosphate (152 aa) initn: 1038 init1: 1038 opt: 1038 Z-score: 1372.9 bits: 260.3 E(85289): 9.8e-70 Smith-Waterman score: 1038; 100.0% identity (100.0% similar) in 152 aa overlap (26-177:1-152) 10 20 30 40 50 60 pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL ::::::::::::::::::::::::::::::::::: NP_000 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL 10 20 30 70 80 90 100 110 120 pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 100 110 120 130 140 150 >>NP_001018148 (OMIM: 156491) nucleoside diphosphate kin (152 aa) initn: 928 init1: 928 opt: 928 Z-score: 1228.3 bits: 233.6 E(85289): 1.1e-61 Smith-Waterman score: 928; 88.2% identity (97.4% similar) in 152 aa overlap (26-177:1-152) 10 20 30 40 50 60 pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL ::: ::::::::::::::::::::::::::::::: NP_001 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL 10 20 30 70 80 90 100 110 120 pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN :..::..:::. ::.::.:::::::: ::::::.:::::::::::::::::::::::::: NP_001 VAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETN 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE ::::::::::::::::::::::::::::.::::::.:::.::::::: :::..:.:: NP_001 PADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 100 110 120 130 140 150 >>NP_002503 (OMIM: 156491) nucleoside diphosphate kinase (152 aa) initn: 928 init1: 928 opt: 928 Z-score: 1228.3 bits: 233.6 E(85289): 1.1e-61 Smith-Waterman score: 928; 88.2% identity (97.4% similar) in 152 aa overlap (26-177:1-152) 10 20 30 40 50 60 pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL ::: ::::::::::::::::::::::::::::::: NP_002 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL 10 20 30 70 80 90 100 110 120 pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN :..::..:::. ::.::.:::::::: ::::::.:::::::::::::::::::::::::: NP_002 VAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETN 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE ::::::::::::::::::::::::::::.::::::.:::.::::::: :::..:.:: NP_002 PADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 100 110 120 130 140 150 >>NP_001018147 (OMIM: 156491) nucleoside diphosphate kin (152 aa) initn: 928 init1: 928 opt: 928 Z-score: 1228.3 bits: 233.6 E(85289): 1.1e-61 Smith-Waterman score: 928; 88.2% identity (97.4% similar) in 152 aa overlap (26-177:1-152) 10 20 30 40 50 60 pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL ::: ::::::::::::::::::::::::::::::: NP_001 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL 10 20 30 70 80 90 100 110 120 pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN :..::..:::. ::.::.:::::::: ::::::.:::::::::::::::::::::::::: NP_001 VAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETN 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE ::::::::::::::::::::::::::::.::::::.:::.::::::: :::..:.:: NP_001 PADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 100 110 120 130 140 150 >>NP_001018149 (OMIM: 156491) nucleoside diphosphate kin (152 aa) initn: 928 init1: 928 opt: 928 Z-score: 1228.3 bits: 233.6 E(85289): 1.1e-61 Smith-Waterman score: 928; 88.2% identity (97.4% similar) in 152 aa overlap (26-177:1-152) 10 20 30 40 50 60 pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL ::: ::::::::::::::::::::::::::::::: NP_001 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL 10 20 30 70 80 90 100 110 120 pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN :..::..:::. ::.::.:::::::: ::::::.:::::::::::::::::::::::::: NP_001 VAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETN 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE ::::::::::::::::::::::::::::.::::::.:::.::::::: :::..:.:: NP_001 PADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 100 110 120 130 140 150 >>NP_002504 (OMIM: 601817) nucleoside diphosphate kinase (169 aa) initn: 726 init1: 726 opt: 726 Z-score: 962.0 bits: 184.5 E(85289): 7.6e-47 Smith-Waterman score: 726; 67.6% identity (93.2% similar) in 148 aa overlap (30-177:22-169) 10 20 30 40 50 60 pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL ::::.:.::::::: :::::..:::.:::.: NP_002 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKL 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN :.::..::::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: :: NP_002 VALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATN 60 70 80 90 100 110 130 140 150 160 170 pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE :::. ::::::::::.::.:.::::::::::..::.:::. .::. . . : .:.:: NP_002 PADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 120 130 140 150 160 >>NP_005000 (OMIM: 601818) nucleoside diphosphate kinase (187 aa) initn: 636 init1: 621 opt: 621 Z-score: 823.4 bits: 158.9 E(85289): 4e-39 Smith-Waterman score: 621; 58.3% identity (88.9% similar) in 144 aa overlap (30-173:38-181) 10 20 30 40 50 pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR :::..:.::::::: :::..:.:::..:: NP_005 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET :::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.: NP_005 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 NPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE . :.. :::::::: ....::.::.:::::.:..:: :::. :::.... .:. NP_005 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA 130 140 150 160 170 180 >>XP_005255389 (OMIM: 601817) PREDICTED: nucleoside diph (165 aa) initn: 553 init1: 553 opt: 553 Z-score: 734.7 bits: 142.4 E(85289): 3.5e-34 Smith-Waterman score: 553; 71.0% identity (95.3% similar) in 107 aa overlap (30-136:22-128) 10 20 30 40 50 60 pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL ::::.:.::::::: :::::..:::.:::.: XP_005 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKL 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN :.::..::::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: :: XP_005 VALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATN 60 70 80 90 100 110 130 140 150 160 170 pF1KE3 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE :::. ::::::::::. XP_005 PADAPPGTIRGDFCIEEPDSRQRLGGECPPRDRSLVPRRRAPLLGGQRWALAV 120 130 140 150 160 >>NP_001273364 (OMIM: 601818) nucleoside diphosphate kin (173 aa) initn: 505 init1: 490 opt: 490 Z-score: 651.6 bits: 127.0 E(85289): 1.5e-29 Smith-Waterman score: 490; 60.2% identity (88.9% similar) in 108 aa overlap (30-137:38-145) 10 20 30 40 50 pF1KE3 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR :::..:.::::::: :::..:.:::..:: NP_001 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET :::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.: NP_001 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 NPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE . :.. :::::::: ... NP_001 DSAEAAPGTIRGDFSVHISSHRLAPLDRGQREQQMVPGIPQGAHEA 130 140 150 160 170 177 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 19:23:36 2016 done: Thu Nov 3 19:23:36 2016 Total Scan time: 5.420 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]