FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3509, 580 aa 1>>>pF1KE3509 580 - 580 aa - 580 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1196+/-0.000346; mu= 20.6120+/- 0.022 mean_var=81.1302+/-16.530, 0's: 0 Z-trim(115.3): 121 B-trim: 690 in 1/58 Lambda= 0.142391 statistics sampled from 25579 (25712) to 25579 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.301), width: 16 Scan time: 10.890 The best scores are: opt bits E(85289) NP_277041 (OMIM: 609097) F-box only protein 24 iso ( 580) 4008 833.3 0 XP_011514324 (OMIM: 609097) PREDICTED: F-box only ( 585) 3937 818.8 0 NP_036304 (OMIM: 609097) F-box only protein 24 iso ( 618) 3930 817.3 0 XP_016867450 (OMIM: 609097) PREDICTED: F-box only ( 603) 3924 816.1 0 NP_001156971 (OMIM: 609097) F-box only protein 24 ( 568) 3923 815.9 0 XP_011514325 (OMIM: 609097) PREDICTED: F-box only ( 412) 2848 594.9 1.7e-169 XP_005250316 (OMIM: 609097) PREDICTED: F-box only ( 561) 2665 557.4 4.3e-158 XP_016875865 (OMIM: 603524) PREDICTED: RCC1 and BT ( 324) 189 48.6 3.8e-05 NP_061185 (OMIM: 609587) protein RCC2 [Homo sapien ( 522) 187 48.4 7.1e-05 NP_001129676 (OMIM: 609587) protein RCC2 [Homo sap ( 522) 187 48.4 7.1e-05 XP_016875864 (OMIM: 603524) PREDICTED: RCC1 and BT ( 340) 183 47.4 9.2e-05 XP_016875863 (OMIM: 603524) PREDICTED: RCC1 and BT ( 340) 183 47.4 9.2e-05 XP_005266301 (OMIM: 603524) PREDICTED: RCC1 and BT ( 527) 183 47.6 0.00013 NP_001273760 (OMIM: 603524) RCC1 and BTB domain-co ( 527) 183 47.6 0.00013 XP_006719822 (OMIM: 603524) PREDICTED: RCC1 and BT ( 551) 183 47.6 0.00013 NP_001259 (OMIM: 603524) RCC1 and BTB domain-conta ( 551) 183 47.6 0.00013 XP_005266299 (OMIM: 603524) PREDICTED: RCC1 and BT ( 551) 183 47.6 0.00013 XP_016875862 (OMIM: 603524) PREDICTED: RCC1 and BT ( 555) 183 47.6 0.00013 NP_001273759 (OMIM: 603524) RCC1 and BTB domain-co ( 556) 183 47.6 0.00013 XP_016875860 (OMIM: 603524) PREDICTED: RCC1 and BT ( 556) 183 47.6 0.00013 XP_016875861 (OMIM: 603524) PREDICTED: RCC1 and BT ( 556) 183 47.6 0.00013 XP_011533196 (OMIM: 603524) PREDICTED: RCC1 and BT ( 556) 183 47.6 0.00013 XP_016875858 (OMIM: 603524) PREDICTED: RCC1 and BT ( 561) 183 47.6 0.00013 XP_016875859 (OMIM: 603524) PREDICTED: RCC1 and BT ( 561) 183 47.6 0.00013 XP_016878195 (OMIM: 605109,617011) PREDICTED: prob (2792) 189 49.4 0.00018 XP_011533438 (OMIM: 103780,607867) PREDICTED: RCC1 ( 288) 177 46.1 0.00019 NP_003913 (OMIM: 605109,617011) probable E3 ubiqui (4861) 189 49.7 0.00027 XP_016878194 (OMIM: 605109,617011) PREDICTED: prob (4883) 189 49.7 0.00027 XP_016878193 (OMIM: 605109,617011) PREDICTED: prob (4885) 189 49.7 0.00027 XP_016878192 (OMIM: 605109,617011) PREDICTED: prob (4891) 189 49.7 0.00027 XP_016878191 (OMIM: 605109,617011) PREDICTED: prob (4892) 189 49.7 0.00027 XP_016878190 (OMIM: 605109,617011) PREDICTED: prob (4892) 189 49.7 0.00027 XP_016878189 (OMIM: 605109,617011) PREDICTED: prob (4897) 189 49.7 0.00027 XP_016878188 (OMIM: 605109,617011) PREDICTED: prob (4909) 189 49.7 0.00027 XP_005266498 (OMIM: 103780,607867) PREDICTED: RCC1 ( 531) 177 46.3 0.0003 NP_060661 (OMIM: 103780,607867) RCC1 and BTB domai ( 531) 177 46.3 0.0003 XP_011533436 (OMIM: 103780,607867) PREDICTED: RCC1 ( 531) 177 46.3 0.0003 XP_011533435 (OMIM: 103780,607867) PREDICTED: RCC1 ( 531) 177 46.3 0.0003 XP_011533437 (OMIM: 103780,607867) PREDICTED: RCC1 ( 402) 153 41.3 0.0074 >>NP_277041 (OMIM: 609097) F-box only protein 24 isoform (580 aa) initn: 4008 init1: 4008 opt: 4008 Z-score: 4450.1 bits: 833.3 E(85289): 0 Smith-Waterman score: 4008; 100.0% identity (100.0% similar) in 580 aa overlap (1-580:1-580) 10 20 30 40 50 60 pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK 490 500 510 520 530 540 550 560 570 580 pF1KE3 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET :::::::::::::::::::::::::::::::::::::::: NP_277 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET 550 560 570 580 >>XP_011514324 (OMIM: 609097) PREDICTED: F-box only prot (585 aa) initn: 3930 init1: 3930 opt: 3937 Z-score: 4371.2 bits: 818.8 E(85289): 0 Smith-Waterman score: 3937; 98.8% identity (99.3% similar) in 578 aa overlap (3-580:10-585) 10 20 30 40 50 pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISF :.. :: . ::::::::::::::::::::::::::::::::::::::::: XP_011 MNAEPLAGRERSSPL--QWRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISF 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 LPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLY 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 FQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKR 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 ACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQ 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 RVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRK 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 VSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLAL 300 310 320 330 340 350 360 370 380 390 400 410 pF1KE3 SLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLW 360 370 380 390 400 410 420 430 440 450 460 470 pF1KE3 CGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATREC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATREC 420 430 440 450 460 470 480 490 500 510 520 530 pF1KE3 LYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQ 480 490 500 510 520 530 540 550 560 570 580 pF1KE3 DRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET ::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET 540 550 560 570 580 >>NP_036304 (OMIM: 609097) F-box only protein 24 isoform (618 aa) initn: 3930 init1: 3930 opt: 3930 Z-score: 4363.1 bits: 817.3 E(85289): 0 Smith-Waterman score: 3930; 100.0% identity (100.0% similar) in 568 aa overlap (13-580:51-618) 10 20 30 40 pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLF :::::::::::::::::::::::::::::: NP_036 SREGAIRMVRGSQRRKLQKFTRLCGREEGLRVKRSCPSCGSELGVEEKRGKGNPISIQLF 30 40 50 60 70 80 50 60 70 80 90 100 pF1KE3 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR 90 100 110 120 130 140 110 120 130 140 150 160 pF1KE3 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL 150 160 170 180 190 200 170 180 190 200 210 220 pF1KE3 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD 210 220 230 240 250 260 230 240 250 260 270 280 pF1KE3 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP 270 280 290 300 310 320 290 300 310 320 330 340 pF1KE3 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF 330 340 350 360 370 380 350 360 370 380 390 400 pF1KE3 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ 390 400 410 420 430 440 410 420 430 440 450 460 pF1KE3 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL 450 460 470 480 490 500 470 480 490 500 510 520 pF1KE3 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY 510 520 530 540 550 560 530 540 550 560 570 580 pF1KE3 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET 570 580 590 600 610 >>XP_016867450 (OMIM: 609097) PREDICTED: F-box only prot (603 aa) initn: 3924 init1: 3924 opt: 3924 Z-score: 4356.6 bits: 816.1 E(85289): 0 Smith-Waterman score: 3924; 99.8% identity (100.0% similar) in 568 aa overlap (13-580:36-603) 10 20 30 40 pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLF .::::::::::::::::::::::::::::: XP_016 CRAGEISGEVSTGSPQKREEDVCQCRPECSQVKRSCPSCGSELGVEEKRGKGNPISIQLF 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE3 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE3 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE3 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF 310 320 330 340 350 360 350 360 370 380 390 400 pF1KE3 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ 370 380 390 400 410 420 410 420 430 440 450 460 pF1KE3 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL 430 440 450 460 470 480 470 480 490 500 510 520 pF1KE3 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY 490 500 510 520 530 540 530 540 550 560 570 580 pF1KE3 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET 550 560 570 580 590 600 >>NP_001156971 (OMIM: 609097) F-box only protein 24 isof (568 aa) initn: 3923 init1: 3923 opt: 3923 Z-score: 4355.8 bits: 815.9 E(85289): 0 Smith-Waterman score: 3923; 100.0% identity (100.0% similar) in 567 aa overlap (14-580:2-568) 10 20 30 40 50 60 pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV 10 20 30 40 70 80 90 100 110 120 pF1KE3 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE3 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE3 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL 290 300 310 320 330 340 370 380 390 400 410 420 pF1KE3 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL 350 360 370 380 390 400 430 440 450 460 470 480 pF1KE3 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH 410 420 430 440 450 460 490 500 510 520 530 540 pF1KE3 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK 470 480 490 500 510 520 550 560 570 580 pF1KE3 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET :::::::::::::::::::::::::::::::::::::::: NP_001 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET 530 540 550 560 >>XP_011514325 (OMIM: 609097) PREDICTED: F-box only prot (412 aa) initn: 2848 init1: 2848 opt: 2848 Z-score: 3164.1 bits: 594.9 E(85289): 1.7e-169 Smith-Waterman score: 2848; 100.0% identity (100.0% similar) in 412 aa overlap (169-580:1-412) 140 150 160 170 180 190 pF1KE3 FLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYR :::::::::::::::::::::::::::::: XP_011 MQWKRACRYVVLCRGAKDFASDPRCDTVYR 10 20 30 200 210 220 230 240 250 pF1KE3 KYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQR 40 50 60 70 80 90 260 270 280 290 300 310 pF1KE3 ALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTD 100 110 120 130 140 150 320 330 340 350 360 370 pF1KE3 QGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRI 160 170 180 190 200 210 380 390 400 410 420 430 pF1KE3 FMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCG 220 230 240 250 260 270 440 450 460 470 480 490 pF1KE3 AGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSHDIEQHAPYRHLPASRVVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSHDIEQHAPYRHLPASRVVG 280 290 300 310 320 330 500 510 520 530 540 550 pF1KE3 TPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWE 340 350 360 370 380 390 560 570 580 pF1KE3 ALDMLQRAEGGGGGVGPPAPET :::::::::::::::::::::: XP_011 ALDMLQRAEGGGGGVGPPAPET 400 410 >>XP_005250316 (OMIM: 609097) PREDICTED: F-box only prot (561 aa) initn: 2665 init1: 2665 opt: 2665 Z-score: 2959.2 bits: 557.4 E(85289): 4.3e-158 Smith-Waterman score: 3398; 90.0% identity (90.0% similar) in 568 aa overlap (13-580:51-561) 10 20 30 40 pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLF :::::::::::::::::::::::::::::: XP_005 SREGAIRMVRGSQRRKLQKFTRLCGREEGLRVKRSCPSCGSELGVEEKRGKGNPISIQLF 30 40 50 60 70 80 50 60 70 80 90 100 pF1KE3 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR 90 100 110 120 130 140 110 120 130 140 150 160 pF1KE3 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL 150 160 170 180 190 200 170 180 190 200 210 220 pF1KE3 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD 210 220 230 240 250 260 230 240 250 260 270 280 pF1KE3 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP 270 280 290 300 310 320 290 300 310 320 330 340 pF1KE3 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF 330 340 350 360 370 380 350 360 370 380 390 400 pF1KE3 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ 390 400 410 420 430 440 410 420 430 440 450 460 pF1KE3 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL : :: XP_005 V---------------------------------------------------------PL 470 480 490 500 510 520 pF1KE3 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY 450 460 470 480 490 500 530 540 550 560 570 580 pF1KE3 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET 510 520 530 540 550 560 >>XP_016875865 (OMIM: 603524) PREDICTED: RCC1 and BTB do (324 aa) initn: 171 init1: 123 opt: 189 Z-score: 213.4 bits: 48.6 E(85289): 3.8e-05 Smith-Waterman score: 189; 27.3% identity (52.2% similar) in 249 aa overlap (181-417:87-324) 160 170 180 190 200 pF1KE3 YVGTLFFLKNALVSTLGQMQWKRACRYVVLCRGAKDFAS--DPR-CDTVYRKYLYVLATR : : : : .:: :.. : . :. XP_016 QACVFGSAGNEVLYTTVNDEIFVLGTNCCGCLGLGDVQSTIEPRRLDSLNGKKIACLSYG 60 70 80 90 100 110 210 220 230 240 250 260 pF1KE3 E-PQEVVGTTSSRACD-CVEVYLQ-SSGQRVFKMTFHH---SMTFKQIVLVGQETQRALL :. :..:: ... ..: : ..: .. : ... ::.. :. . ..:. XP_016 SGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLV 120 130 140 150 160 170 270 280 290 300 310 320 pF1KE3 LLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGG : : .:.... :.. : . : :.:. : . :. .. .: . :.: : XP_016 L-TSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTG- 180 190 200 210 220 230 330 340 350 360 370 pF1KE3 VYFEVHTPGVYRDLFGTLQAFDPLDQQMP--LALSLPAKILFCALGYNH-LGLVDEFGRI ::.. : . : : . .: : .: .. : :: : : :.:: :.. XP_016 ---EVYVWGYNGN--GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDE-GQV 240 250 260 270 280 380 390 400 410 420 430 pF1KE3 FMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCG . : : :::::::.: ... :: : . . :: : XP_016 YAWGANSYGQLGTGNKSNQSYPTPVTVEKDRV---CGQN 290 300 310 320 440 450 460 470 480 490 pF1KE3 AGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSHDIEQHAPYRHLPASRVVG >>NP_061185 (OMIM: 609587) protein RCC2 [Homo sapiens] (522 aa) initn: 178 init1: 104 opt: 187 Z-score: 208.5 bits: 48.4 E(85289): 7.1e-05 Smith-Waterman score: 187; 26.5% identity (51.0% similar) in 204 aa overlap (288-481:126-321) 260 270 280 290 300 310 pF1KE3 RALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYL--PHLRVACMTSNQSSTLY : : :.... : :: : .:... . :. NP_061 KLEGSKCKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPH-RYGCLAGVRVRTVV 100 110 120 130 140 150 320 330 340 350 360 pF1KE3 VTDQGGVYFEVHTPGVY----RDLFGTLQAFDPLDQQMP-LALSLPAKILFCAL-GYNHL . .. . . : : :. : : : . : : .: ... : : :: NP_061 SGSCAAHSLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAACGRNHT 160 170 180 190 200 210 370 380 390 400 410 420 pF1KE3 GLVDEFGRIFMQGNNRYGQLGTGDKMDR-GEPTQVCYLQRPIT-LWCGLNHSLVLSQSSE . : : .: :.:..:::: :.. : :.:. : .::: . :: . :... . NP_061 LALTETGSVFAFGENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGAEFSMIM----D 220 230 240 250 260 270 430 440 450 460 470 480 pF1KE3 FSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSHDIEQHAP . .: . :: :.: :. :. .. : : : ..: ...: NP_061 CKGNLYSFGCPEYGQLGHNSDGK--FIARAQRIEY-DCELVPRRVAIFIEKTKDGQILPV 280 290 300 310 320 490 500 510 520 530 540 pF1KE3 YRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMKEIVGWMP NP_061 PNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFDFPGRGAS 330 340 350 360 370 380 >>NP_001129676 (OMIM: 609587) protein RCC2 [Homo sapiens (522 aa) initn: 178 init1: 104 opt: 187 Z-score: 208.5 bits: 48.4 E(85289): 7.1e-05 Smith-Waterman score: 187; 26.5% identity (51.0% similar) in 204 aa overlap (288-481:126-321) 260 270 280 290 300 310 pF1KE3 RALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYL--PHLRVACMTSNQSSTLY : : :.... : :: : .:... . :. NP_001 KLEGSKCKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPH-RYGCLAGVRVRTVV 100 110 120 130 140 150 320 330 340 350 360 pF1KE3 VTDQGGVYFEVHTPGVY----RDLFGTLQAFDPLDQQMP-LALSLPAKILFCAL-GYNHL . .. . . : : :. : : : . : : .: ... : : :: NP_001 SGSCAAHSLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAACGRNHT 160 170 180 190 200 210 370 380 390 400 410 420 pF1KE3 GLVDEFGRIFMQGNNRYGQLGTGDKMDR-GEPTQVCYLQRPIT-LWCGLNHSLVLSQSSE . : : .: :.:..:::: :.. : :.:. : .::: . :: . :... . NP_001 LALTETGSVFAFGENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGAEFSMIM----D 220 230 240 250 260 270 430 440 450 460 470 480 pF1KE3 FSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSHDIEQHAP . .: . :: :.: :. :. .. : : : ..: ...: NP_001 CKGNLYSFGCPEYGQLGHNSDGK--FIARAQRIEY-DCELVPRRVAIFIEKTKDGQILPV 280 290 300 310 320 490 500 510 520 530 540 pF1KE3 YRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMKEIVGWMP NP_001 PNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFDFPGRGAS 330 340 350 360 370 380 580 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 02:13:24 2016 done: Sat Nov 5 02:13:26 2016 Total Scan time: 10.890 Total Display time: 0.100 Function used was FASTA [36.3.4 Apr, 2011]