Result of FASTA (omim) for
pFN21AE1031
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1031, 1393 aa
1>>>pF1KE1031 1393 - 1393 aa - 1393 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9106+/-0.00035; mu= 16.5164+/- 0.022
mean_var=123.2455+/-24.248, 0's: 0 Z-trim(118.4): 19 B-trim: 0 in 0/53
Lambda= 0.115528
statistics sampled from 31290 (31309) to 31290 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.367), width: 16
Scan time: 16.080
The best scores are: opt bits E(85289)
XP_005254354 (OMIM: 611475) PREDICTED: RNA polymer (1393) 9276 1558.1 0
NP_056355 (OMIM: 611475) RNA polymerase II-associa (1393) 9276 1558.1 0
XP_006720532 (OMIM: 611475) PREDICTED: RNA polymer (1333) 7179 1208.6 0
>>XP_005254354 (OMIM: 611475) PREDICTED: RNA polymerase (1393 aa)
initn: 9276 init1: 9276 opt: 9276 Z-score: 8353.4 bits: 1558.1 E(85289): 0
Smith-Waterman score: 9276; 99.9% identity (99.9% similar) in 1393 aa overlap (1-1393:1-1393)
10 20 30 40 50 60
pF1KE1 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE1 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATGVLECPRLIETIVREFLPT
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
XP_005 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE1 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE1 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE1 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE1 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMERLSEELLLPLLSQPT
::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
XP_005 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPT
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE1 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE1 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE1 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE1 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE1 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE1 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE1 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE1 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE1 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR
1330 1340 1350 1360 1370 1380
1390
pF1KE1 LTSTVLQNGVSET
:::::::::::::
XP_005 LTSTVLQNGVSET
1390
>>NP_056355 (OMIM: 611475) RNA polymerase II-associated (1393 aa)
initn: 9276 init1: 9276 opt: 9276 Z-score: 8353.4 bits: 1558.1 E(85289): 0
Smith-Waterman score: 9276; 99.9% identity (99.9% similar) in 1393 aa overlap (1-1393:1-1393)
10 20 30 40 50 60
pF1KE1 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE1 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATGVLECPRLIETIVREFLPT
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
NP_056 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE1 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE1 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE1 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE1 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMERLSEELLLPLLSQPT
::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_056 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPT
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE1 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE1 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE1 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE1 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE1 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE1 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE1 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE1 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE1 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR
1330 1340 1350 1360 1370 1380
1390
pF1KE1 LTSTVLQNGVSET
:::::::::::::
NP_056 LTSTVLQNGVSET
1390
>>XP_006720532 (OMIM: 611475) PREDICTED: RNA polymerase (1333 aa)
initn: 8866 init1: 7177 opt: 7179 Z-score: 6464.8 bits: 1208.6 E(85289): 0
Smith-Waterman score: 8750; 95.5% identity (95.6% similar) in 1393 aa overlap (1-1393:1-1333)
10 20 30 40 50 60
pF1KE1 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA
::::::::::::::
XP_006 EEILQEQQRLLAQL----------------------------------------------
250
310 320 330 340 350 360
pF1KE1 SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS
::::::::::::::::::::::::::::::::::::::::::::::
XP_006 --------------ALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS
260 270 280 290 300
370 380 390 400 410 420
pF1KE1 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
310 320 330 340 350 360
430 440 450 460 470 480
pF1KE1 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD
370 380 390 400 410 420
490 500 510 520 530 540
pF1KE1 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL
430 440 450 460 470 480
550 560 570 580 590 600
pF1KE1 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATGVLECPRLIETIVREFLPT
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
XP_006 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPT
490 500 510 520 530 540
610 620 630 640 650 660
pF1KE1 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL
550 560 570 580 590 600
670 680 690 700 710 720
pF1KE1 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ
610 620 630 640 650 660
730 740 750 760 770 780
pF1KE1 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK
670 680 690 700 710 720
790 800 810 820 830 840
pF1KE1 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMERLSEELLLPLLSQPT
::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
XP_006 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPT
730 740 750 760 770 780
850 860 870 880 890 900
pF1KE1 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL
790 800 810 820 830 840
910 920 930 940 950 960
pF1KE1 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA
850 860 870 880 890 900
970 980 990 1000 1010 1020
pF1KE1 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP
910 920 930 940 950 960
1030 1040 1050 1060 1070 1080
pF1KE1 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE
970 980 990 1000 1010 1020
1090 1100 1110 1120 1130 1140
pF1KE1 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE
1030 1040 1050 1060 1070 1080
1150 1160 1170 1180 1190 1200
pF1KE1 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR
1090 1100 1110 1120 1130 1140
1210 1220 1230 1240 1250 1260
pF1KE1 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
1150 1160 1170 1180 1190 1200
1270 1280 1290 1300 1310 1320
pF1KE1 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
1210 1220 1230 1240 1250 1260
1330 1340 1350 1360 1370 1380
pF1KE1 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR
1270 1280 1290 1300 1310 1320
1390
pF1KE1 LTSTVLQNGVSET
:::::::::::::
XP_006 LTSTVLQNGVSET
1330
1393 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:31:11 2016 done: Sat Nov 5 07:31:13 2016
Total Scan time: 16.080 Total Display time: 0.240
Function used was FASTA [36.3.4 Apr, 2011]