FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3520, 293 aa 1>>>pF1KE3520 293 - 293 aa - 293 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2348+/-0.000282; mu= 9.2583+/- 0.018 mean_var=178.7466+/-36.805, 0's: 0 Z-trim(124.1): 256 B-trim: 2285 in 1/57 Lambda= 0.095930 statistics sampled from 44966 (45251) to 44966 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.531), width: 16 Scan time: 9.090 The best scores are: opt bits E(85289) NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 ( 364) 1860 268.7 1.2e-71 XP_011537672 (OMIM: 606727) PREDICTED: homeobox pr ( 194) 825 125.2 1e-28 NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 724 111.4 2.3e-24 NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 679 105.2 1.7e-22 XP_006723629 (OMIM: 604612) PREDICTED: homeobox pr ( 202) 491 79.0 8.6e-15 NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 ( 273) 491 79.1 1.1e-14 NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 ( 354) 474 76.9 6.5e-14 NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 ( 239) 428 70.3 4.1e-12 NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 374 63.0 9.1e-10 NP_003308 (OMIM: 118700,188550,600635,610978) home ( 371) 351 59.8 8.9e-09 NP_001073136 (OMIM: 118700,188550,600635,610978) h ( 401) 351 59.9 9.4e-09 NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 324 56.1 1.2e-07 NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 310 54.1 4.4e-07 NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 304 53.0 4.5e-07 NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 303 53.0 6.5e-07 NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 284 50.5 5.1e-06 NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 278 49.6 7.8e-06 NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 278 49.6 7.9e-06 XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 278 49.6 7.9e-06 NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 271 48.7 1.7e-05 XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 267 48.0 2e-05 NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 267 48.1 2.3e-05 NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 268 48.4 2.8e-05 XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05 XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05 XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05 XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05 XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05 XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05 XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05 NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 264 47.7 3.1e-05 XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 263 47.7 4.7e-05 NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 263 47.7 4.7e-05 XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 263 47.7 4.7e-05 XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 263 47.7 4.7e-05 XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 263 47.7 4.7e-05 NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 263 47.7 4.7e-05 XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 263 47.7 4.7e-05 NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 259 47.0 5.2e-05 NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 259 47.1 5.9e-05 XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 259 47.1 5.9e-05 XP_016867292 (OMIM: 220600,600028) PREDICTED: home ( 161) 252 45.8 6.7e-05 XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 252 45.8 6.7e-05 XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 259 47.2 6.7e-05 XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 259 47.2 6.7e-05 XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 259 47.2 6.7e-05 NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 259 47.2 6.7e-05 XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 259 47.2 6.7e-05 XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 259 47.2 6.7e-05 XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 259 47.2 6.7e-05 >>NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 [Hom (364 aa) initn: 1860 init1: 1860 opt: 1860 Z-score: 1407.3 bits: 268.7 E(85289): 1.2e-71 Smith-Waterman score: 1860; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272) 10 20 30 40 50 60 pF1KE3 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_660 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_660 EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 SCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_660 SCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 LASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_660 LASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVT 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 PSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAGPPRRPLPCSPPAARPEAAPL :::::::::::::::::::::::::::::::: NP_660 PSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGG 250 260 270 280 290 300 NP_660 GGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTAAGAACAQGTLQG 310 320 330 340 350 360 >>XP_011537672 (OMIM: 606727) PREDICTED: homeobox protei (194 aa) initn: 851 init1: 825 opt: 825 Z-score: 636.6 bits: 125.2 E(85289): 1e-28 Smith-Waterman score: 825; 98.3% identity (100.0% similar) in 121 aa overlap (1-121:1-121) 10 20 30 40 50 60 pF1KE3 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. XP_011 EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 SCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREH . XP_011 AQDPNKHALTTPLHETRLRLLRAFFGYWGCLRVPQRQEPQTFPKVQPFTTARSAQPPKRV 130 140 150 160 170 180 >>NP_004378 (OMIM: 108900,187500,217095,225250,600584,61 (324 aa) initn: 611 init1: 491 opt: 724 Z-score: 558.3 bits: 111.4 E(85289): 2.3e-24 Smith-Waterman score: 837; 51.5% identity (69.1% similar) in 301 aa overlap (2-291:1-286) 10 20 30 40 50 pF1KE3 MMLPSP-VTSTPFSVKDILNLEQQHQHFHGA-HLQADLEHHFHSAPCMLAAAEGTQFSDG :.::: .: ::::::::::::::.. . .: .:.: :: . . ::::: . .. NP_004 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYA-- 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 GEEDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRD-R : : : : : : :.. : : . . :. . . :. ..: : NP_004 GPEAAAP-G-----LPELRAELGRAPS---PAKCASAFPAAPAFYPRAYSD-PDPAKDPR 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 SQKS--CQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSA ..:. : :.:..: . :...:::. : :::::::::::::.:::::::::::::: NP_004 AEKKELCALQKAVEL--EKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSA 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE3 PEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLEL-GAHAPPPPP-RRVAVPVLVR :::..::: :::::::::::::::::::::::::..::: : ::::: ::.::::::: NP_004 PERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVR 170 180 190 200 210 220 240 250 260 270 280 pF1KE3 DGKPCVTPSAQAYGAPYSVGASAYSYNSFPAY-GYGNSAAGPPRR---PLPCSPPAARPE :::::. :: :. :.:: . :.::..::: :::..: .: : .: :.: NP_004 DGKPCLGDSAP-YAPAYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPA 230 240 250 260 270 280 290 pF1KE3 AAPL .: NP_004 TAAANNNFVNFGVGDLNAVQSPGIPQSNSGVSTLHGIRAW 290 300 310 320 >>NP_001129743 (OMIM: 217095,611770) homeobox protein Nk (301 aa) initn: 658 init1: 510 opt: 679 Z-score: 525.0 bits: 105.2 E(85289): 1.7e-22 Smith-Waterman score: 745; 48.6% identity (68.8% similar) in 292 aa overlap (2-286:1-275) 10 20 30 40 50 60 pF1KE3 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE :: :::::::::::::: ::.... : : : . . :. :. . NP_001 MLLSPVTSTPFSVKDILRLERERS------CPAASPH-----PRVRKSPENFQYL---R 10 20 30 40 70 80 90 100 110 120 pF1KE3 EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQK : : .: .. .. ...: . :.. : : ..::. . . : . ... . NP_001 MDAEPRGSEVHNAGG-GGGDRKLDGSEPPGGPCEAVLEMDAERMGEPQPGLNAASPLGGG 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 SCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREH . .... ..:: . .::.:: :.:::::::::::::. :::::::::::::::::: NP_001 TRVPERGVGNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREH 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 LASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVT :::.:.::::::::::::::::::::::::::::..: : ::::::::::::::::. NP_001 LASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGH--PLTPRRVAVPVLVRDGKPCLG 170 180 190 200 210 220 250 260 270 280 290 pF1KE3 PS--AQAYGAPYSVGASAYS----YNSFP-AYGYGNSAAGPPRRPLPCSPPAARPEAAPL :. : :. .:::...: :: :.. : . :::. :: : : : .: :. NP_001 PGPGAPAFPSPYSAAVSPYSCYGGYSGAPYGAGYGTCYAGAPSGPAPHTPLASAGFGHGG 230 240 250 260 270 280 NP_001 QNATPQGHLAATLQGVRAW 290 300 >>XP_006723629 (OMIM: 604612) PREDICTED: homeobox protei (202 aa) initn: 442 init1: 334 opt: 491 Z-score: 386.5 bits: 79.0 E(85289): 8.6e-15 Smith-Waterman score: 491; 53.7% identity (74.1% similar) in 162 aa overlap (126-278:31-189) 100 110 120 130 140 150 pF1KE3 VLRDSCSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERP----KPRSRRKP :: : ..: . ...: : ..:: XP_006 MIFSATSPPKFSPTLLHGLAAGAPPQDSSSKSPEPSADESPDNDKETPGGGGDAGKKRKR 10 20 30 40 50 60 160 170 180 190 200 210 pF1KE3 RVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKS :::::.::..::::::.::::::::::::::: ..:: :::::::::.::: :: : .:. XP_006 RVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKG 70 80 90 100 110 120 220 230 240 250 260 pF1KE3 LELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAP-YSVGA--SAYSYNSFPAYGYG .:. .: : :::::::::::::::: . .:: .: ...: :::: .:. . :. XP_006 MEV---TPLPSPRRVAVPVLVRDGKPCHALKAQDLAAATFQAGIPFSAYSAQSLQHMQYN 130 140 150 160 170 270 280 290 pF1KE3 N--SAAGPPRRPLPCSPPAARPEAAPL :.:. :. : XP_006 AQYSSASTPQYPTAHPLVQAQQWTW 180 190 200 >>NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 [Hom (273 aa) initn: 477 init1: 334 opt: 491 Z-score: 384.9 bits: 79.1 E(85289): 1.1e-14 Smith-Waterman score: 495; 40.5% identity (60.9% similar) in 284 aa overlap (8-278:6-260) 10 20 30 40 50 60 pF1KE3 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE :.: :::::::.: . . : : ..::: . . : NP_002 MSLTNTKTGFSVKDILDLPDTN----------DEEG---------SVAEGPEEENEGP 10 20 30 70 80 90 100 110 pF1KE3 EDEEDEGE----KLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRD : . : :. ..:: . ::. : :.. . . .: .. . .. NP_002 EPAKRAGPLGQGALDAVQSLPLKNPFYDSSDNP--YTRWL---ASTEGLQYSLHGLAAGA 40 50 60 70 80 90 120 130 140 150 160 170 pF1KE3 RSQKSCQLKKSLETAGDCKAAEESERP----KPRSRRKPRVLFSQAQVFELERRFKQQRY : : . :: : ..: . ...: : ..:: :::::.::..::::::.:::: NP_002 PPQDSSS--KSPEPSADESPDNDKETPGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRY 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE3 LSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLV ::::::::::: ..:: :::::::::.::: :: : .:..:. .: : :::::::::: NP_002 LSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEV---TPLPSPRRVAVPVLV 160 170 180 190 200 240 250 260 270 280 pF1KE3 RDGKPCVTPSAQAYGAP-YSVGA--SAYSYNSFPAYGYGN--SAAGPPRRPLPCSPPAAR :::::: . .:: .: ...: :::: .:. . :. :.:. :. : NP_002 RDGKPCHALKAQDLAAATFQAGIPFSAYSAQSLQHMQYNAQYSSASTPQYPTAHPLVQAQ 210 220 230 240 250 260 290 pF1KE3 PEAAPL NP_002 QWTW 270 >>NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 [Hom (354 aa) initn: 519 init1: 342 opt: 474 Z-score: 370.8 bits: 76.9 E(85289): 6.5e-14 Smith-Waterman score: 474; 51.5% identity (66.7% similar) in 171 aa overlap (129-291:174-336) 100 110 120 130 140 150 pF1KE3 DSCSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQA .. : .:: . : ::: ::::::: NP_149 RYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAP----RRKRRVLFSQA 150 160 170 180 190 160 170 180 190 200 210 pF1KE3 QVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLE----- ::.:::::::::.:::::::::::: ..:: :::::::::.::: ::: .::. . NP_149 QVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQE 200 210 220 230 240 250 220 230 240 250 260 270 pF1KE3 --LGAHAPPPP-PRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYGNS :: :::: ::::::::::.::::: .. . .: ..: . . . :: . NP_149 GGLGPPPPPPPSPRRVAVPVLVKDGKPC--QNGASTPTPGQAGPQPPAPT--PAPELEEL 260 270 280 290 300 310 280 290 pF1KE3 AAGPPRRPLPCSPPAARPEAAPL . .:: : . :: :: NP_149 SPSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW 320 330 340 350 >>NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 [Hom (239 aa) initn: 390 init1: 293 opt: 428 Z-score: 338.5 bits: 70.3 E(85289): 4.1e-12 Smith-Waterman score: 446; 45.9% identity (63.9% similar) in 205 aa overlap (103-283:31-232) 80 90 100 110 120 pF1KE3 LNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVV---RDRSQKSCQLKKSLE ::. . .: .. .:.. . ..::: NP_055 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLE 10 20 30 40 50 60 130 140 150 160 170 180 pF1KE3 TAGDCKAAEESERP-KPRS----RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASS :. .. . : :: .: : :.: :::::.::..::::::.:::::::::::.::: NP_055 TSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASL 70 80 90 100 110 120 190 200 210 220 230 pF1KE3 LKLTSTQVKIWFQNRRYKCKRQRQD---KSLELGA----HAPPPPPRRVAVPVLVRDGKP :.:: :::::::::.::: :: : .: .:.: :: : :::.::::::::.: NP_055 LRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQP 130 140 150 160 170 180 240 250 260 270 280 pF1KE3 CV--------TPSAQAY-GAPYSVGASAYSYNSFPAYGYGNSAAGPPRRPLPCSPPAARP : : .:: ::: :.: ..::.: :.. . : :: NP_055 CGGGGGGEVGTAAAQEKCGAP---PAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSW 190 200 210 220 230 290 pF1KE3 EAAPL NP_055 NW >>NP_001180 (OMIM: 602183,613330) homeobox protein Nkx-3 (333 aa) initn: 348 init1: 295 opt: 374 Z-score: 296.3 bits: 63.0 E(85289): 9.1e-10 Smith-Waterman score: 374; 48.3% identity (67.6% similar) in 145 aa overlap (131-272:190-328) 110 120 130 140 150 160 pF1KE3 CSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQV :: . :: ::::..:. :. ::.::: NP_001 PRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRS-RAAFSHAQV 160 170 180 190 200 210 170 180 190 200 210 220 pF1KE3 FELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPP :::::::..:::::.::: ::.::::: ::::::::::::: ::... .: : NP_001 FELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLL----ASA 220 230 240 250 260 270 230 240 250 260 270 pF1KE3 PPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASA---YSYNSFPAYGYGNSAAGPPRR : ..::: ::::: . :. .. : . . : : .:... .. :: NP_001 PAAKKVAVKVLVRDDQRQYLPG-EVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ 280 290 300 310 320 330 280 290 pF1KE3 PLPCSPPAARPEAAPL >>NP_003308 (OMIM: 118700,188550,600635,610978) homeobox (371 aa) initn: 548 init1: 342 opt: 351 Z-score: 278.5 bits: 59.8 E(85289): 8.9e-09 Smith-Waterman score: 464; 36.3% identity (56.0% similar) in 339 aa overlap (2-292:1-337) 10 20 30 40 50 pF1KE3 MMLPSPVTSTPFSVKDILN-LEQQHQH--FHGAHLQADLEHHFH--SAP---CMLAAAEG : :: .:::::.:::. ::..... ..:. : : : . . .:: : : : NP_003 MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVG 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 TQFSDGGEEDEEDEG-EKLSYLNSLAAADGH-GDSGLCPQGYVHTVLRDSCSEPKEHEEE . . . : .::. . .:. :. . : : : .:.: : : . . NP_003 HHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPP-YQDT-MRNSASGPGWYGAN 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 PE-----VVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRS-RRKPRVLFSQAQVFELE :. . : . : . ... :. . .. : : . ::: :::::::::.::: NP_003 PDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELE 120 130 140 150 160 170 170 180 190 200 210 pF1KE3 RRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLEL---------- ::::::.:::::::::::: ..:: :::::::::.::: ::: .::. . NP_003 RRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGG 180 190 200 210 220 230 220 230 240 250 pF1KE3 ---GAHAPPPP------PRRVAVPVLVRDGKPCVT----PSA---QAYGAPYSVGASAYS :. : ::::::::::.::::: . :.: :... . . . NP_003 GGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAA 240 250 260 270 280 290 260 270 280 290 pF1KE3 YNSFPAYGYGNSAAG----PPRRPLPC--SPPAARPEAAPL . : . :...:: : ..: :: :. :.: NP_003 QAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDY 300 310 320 330 340 350 NP_003 GTMSCSTLLYGRTW 360 370 293 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:33:25 2016 done: Sat Nov 5 22:33:27 2016 Total Scan time: 9.090 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]