FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB0944, 393 aa 1>>>pF1KB0944 393 - 393 aa - 393 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.1455+/-0.000351; mu= 1.9635+/- 0.022 mean_var=289.4357+/-57.757, 0's: 0 Z-trim(124.5): 14 B-trim: 67 in 2/52 Lambda= 0.075387 statistics sampled from 46235 (46254) to 46235 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.542), width: 16 Scan time: 7.410 The best scores are: opt bits E(85289) NP_001035047 (OMIM: 277300,605195,608681) mesoderm ( 397) 2813 318.7 1.5e-86 NP_061140 (OMIM: 608689) mesoderm posterior protei ( 268) 712 90.1 6.9e-18 >>NP_001035047 (OMIM: 277300,605195,608681) mesoderm pos (397 aa) initn: 1596 init1: 1596 opt: 2813 Z-score: 1674.9 bits: 318.7 E(85289): 1.5e-86 Smith-Waterman score: 2813; 99.0% identity (99.0% similar) in 397 aa overlap (1-393:1-397) 10 20 30 40 50 60 pF1KB0 MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB0 SRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB0 KIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQ 130 140 150 160 170 180 190 200 210 220 230 pF1KB0 GQGQGQGQGQGQGQGQGQGQG----RRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGV ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: NP_001 GQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGV 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB0 HDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPAT 250 260 270 280 290 300 300 310 320 330 340 350 pF1KB0 LELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGA 310 320 330 340 350 360 360 370 380 390 pF1KB0 AFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY ::::::::::::::::::::::::::::::::::::: NP_001 AFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY 370 380 390 >>NP_061140 (OMIM: 608689) mesoderm posterior protein 1 (268 aa) initn: 842 init1: 619 opt: 712 Z-score: 442.1 bits: 90.1 E(85289): 6.9e-18 Smith-Waterman score: 802; 52.5% identity (63.2% similar) in 299 aa overlap (1-282:1-268) 10 20 30 40 50 pF1KB0 MAQSP--PPQSLLGHDHWIFAQGWGWAGHWDST------SPASSSDSSGSCPCDGARGLP ::: : :: : . :... .:: . . . : .:: :: :: : :. . NP_061 MAQ-PLCPPLS----ESWMLSAAWGPTRRPPPSDKDCGRSLVSSPDSWGSTPADSP--VA 10 20 30 40 50 60 70 80 90 100 110 pF1KB0 QPQPPSCSSRAAEAAATTPRRARTGPAG-GQRQSASEREKLRMRTLARALHELRRFLPPS .: :. . : .: .. : ::.. : ::::::::::::::::::::::::::::::: NP_061 SPARPG-TLRDPRAPSVGRRGARSSRLGSGQRQSASEREKLRMRTLARALHELRRFLPPS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB0 LAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPA .::::::::::::::::::::::::::::::::::: : ::::::::: ::::::: :: NP_061 VAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRGCPLCPDDCPA 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB0 EAQTQAEGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPER . ::.....:::::.: : ::::: : :::::: :::::.:::: NP_061 QMQTRTQAEGQGQGRGLG----------------LVSAVRAGASWGSPPACPGARAAPE- 180 190 200 210 240 250 260 270 280 pF1KB0 LGRGVHDTDPWA--TPPYCPKIQ----SPPYSSQGTTSDASL--WTPPQGCPWTQSSPEP :: : . ::. : ::: : : : : . : :. NP_061 ------PRDPPALFAEAACPEGQAMEPSPPSPLLPGDVLALLETWMPLSPLEWLPEEPK 220 230 240 250 260 290 300 310 320 330 340 pF1KB0 RNPPVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSA 393 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:48:12 2016 done: Sat Nov 5 22:48:13 2016 Total Scan time: 7.410 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]