FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4303, 298 aa 1>>>pF1KE4303 298 - 298 aa - 298 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9797+/-0.000466; mu= 17.1564+/- 0.029 mean_var=57.8130+/-11.287, 0's: 0 Z-trim(107.3): 70 B-trim: 23 in 1/53 Lambda= 0.168679 statistics sampled from 15322 (15344) to 15322 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.529), E-opt: 0.2 (0.18), width: 16 Scan time: 6.360 The best scores are: opt bits E(85289) NP_001001973 (OMIM: 108729) ATP synthase subunit g ( 298) 1853 459.6 3.4e-129 NP_005165 (OMIM: 108729) ATP synthase subunit gamm ( 297) 1845 457.7 1.3e-128 NP_001307815 (OMIM: 108729) ATP synthase subunit g ( 251) 1557 387.5 1.4e-107 XP_016871779 (OMIM: 108729) PREDICTED: ATP synthas ( 250) 1549 385.6 5.4e-107 >>NP_001001973 (OMIM: 108729) ATP synthase subunit gamma (298 aa) initn: 1853 init1: 1853 opt: 1853 Z-score: 2440.5 bits: 459.6 E(85289): 3.4e-129 Smith-Waterman score: 1853; 99.7% identity (100.0% similar) in 298 aa overlap (1-298:1-298) 10 20 30 40 50 60 pF1KE4 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAE ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: NP_001 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 250 260 270 280 290 >>NP_005165 (OMIM: 108729) ATP synthase subunit gamma, m (297 aa) initn: 1845 init1: 1845 opt: 1845 Z-score: 2430.0 bits: 457.7 E(85289): 1.3e-128 Smith-Waterman score: 1845; 99.7% identity (100.0% similar) in 297 aa overlap (1-297:1-297) 10 20 30 40 50 60 pF1KE4 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAE ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: NP_005 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 250 260 270 280 290 >>NP_001307815 (OMIM: 108729) ATP synthase subunit gamma (251 aa) initn: 1557 init1: 1557 opt: 1557 Z-score: 2052.4 bits: 387.5 E(85289): 1.4e-107 Smith-Waterman score: 1557; 100.0% identity (100.0% similar) in 251 aa overlap (48-298:1-251) 20 30 40 50 60 70 pF1KE4 QWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAERELKPARIYGLGSLALY :::::::::::::::::::::::::::::: NP_001 MKMVAAAKYARAERELKPARIYGLGSLALY 10 20 30 80 90 100 110 120 130 pF1KE4 EKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKI 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE4 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE4 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM 160 170 180 190 200 210 260 270 280 290 pF1KE4 DNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD ::::::::::::::::::::::::::::::::::::::::: NP_001 DNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 220 230 240 250 >>XP_016871779 (OMIM: 108729) PREDICTED: ATP synthase su (250 aa) initn: 1549 init1: 1549 opt: 1549 Z-score: 2041.9 bits: 385.6 E(85289): 5.4e-107 Smith-Waterman score: 1549; 100.0% identity (100.0% similar) in 250 aa overlap (48-297:1-250) 20 30 40 50 60 70 pF1KE4 QWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAERELKPARIYGLGSLALY :::::::::::::::::::::::::::::: XP_016 MKMVAAAKYARAERELKPARIYGLGSLALY 10 20 30 80 90 100 110 120 130 pF1KE4 EKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKI 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE4 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE4 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM 160 170 180 190 200 210 260 270 280 290 pF1KE4 DNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD :::::::::::::::::::::::::::::::::::::::: XP_016 DNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 220 230 240 250 298 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:29:42 2016 done: Sat Nov 5 23:29:43 2016 Total Scan time: 6.360 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]