FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3225, 517 aa 1>>>pF1KE3225 517 - 517 aa - 517 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1450+/-0.00091; mu= 9.7737+/- 0.055 mean_var=114.5571+/-23.103, 0's: 0 Z-trim(109.9): 51 B-trim: 639 in 1/50 Lambda= 0.119829 statistics sampled from 11170 (11220) to 11170 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.345), width: 16 Scan time: 3.330 The best scores are: opt bits E(32554) CCDS9123.2 USP30 gene_id:84749|Hs108|chr12 ( 517) 3558 626.1 2.9e-179 CCDS76599.1 USP30 gene_id:84749|Hs108|chr12 ( 486) 3373 594.1 1.2e-169 >>CCDS9123.2 USP30 gene_id:84749|Hs108|chr12 (517 aa) initn: 3558 init1: 3558 opt: 3558 Z-score: 3331.7 bits: 626.1 E(32554): 2.9e-179 Smith-Waterman score: 3558; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517) 10 20 30 40 50 60 pF1KE3 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 HKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 HKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMP 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 FPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 FPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDT 430 440 450 460 470 480 490 500 510 pF1KE3 VRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE ::::::::::::::::::::::::::::::::::::: CCDS91 VRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE 490 500 510 >>CCDS76599.1 USP30 gene_id:84749|Hs108|chr12 (486 aa) initn: 3373 init1: 3373 opt: 3373 Z-score: 3159.3 bits: 594.1 E(32554): 1.2e-169 Smith-Waterman score: 3373; 100.0% identity (100.0% similar) in 486 aa overlap (32-517:1-486) 10 20 30 40 50 60 pF1KE3 LSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERKK :::::::::::::::::::::::::::::: CCDS76 MKNWGVIGGIAAALAAGIYVIWGPITERKK 10 20 30 70 80 90 100 110 120 pF1KE3 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE3 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE3 KPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 KPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPF 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE3 PLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 PLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTV 400 410 420 430 440 450 490 500 510 pF1KE3 RKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE :::::::::::::::::::::::::::::::::::: CCDS76 RKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE 460 470 480 517 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:37:47 2016 done: Sat Nov 5 23:37:48 2016 Total Scan time: 3.330 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]