(Circular) (Six-base) MAPSORT of: pFN21AB3113.seq Check: 7654 from: 1 to: 5674 pFN21AB3113 5674 bp With 182 enzymes: SgfI * October 20, 2009 10:53 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3484 278 Size: 53 83 186 936 1948 2468 Fragments arranged by size: 2468 1948 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3017 1937 Size: 1080 4594 Acc65I G'GTAC_C Cuts at: 2995 2995 Size: 5674 AclI AA'CG_TT Cuts at: 1563 3801 4174 1563 Size: 2238 373 3063 Fragments arranged by size: 3063 2238 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2505 2869 2876 3737 5121 5389 1632 Size: 873 364 7 861 1384 268 1917 Fragments arranged by size: 1917 1384 873 861 364 268 7 AflII C'TTAA_G Cuts at: 820 1017 2686 820 Size: 197 1669 3808 Fragments arranged by size: 3808 1669 197 AflIII A'CryG_T Cuts at: 1203 2245 4573 5550 1203 Size: 1042 2328 977 1327 Fragments arranged by size: 2328 1327 1042 977 AgeI A'CCGG_T Cuts at: 4505 4505 Size: 5674 AhdI GACnn_n'nnGTC Cuts at: 4403 4403 Size: 5674 AleI CACnn'nnGTG Cuts at: 1166 2906 1166 Size: 1740 3934 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5674 AlwNI CAG_nnn'CTG Cuts at: 2542 3417 4989 2542 Size: 875 1572 3227 Fragments arranged by size: 3227 1572 875 ApaLI G'TGCA_C Cuts at: 2449 3731 4887 2449 Size: 1282 1156 3236 Fragments arranged by size: 3236 1282 1156 ApoI r'AATT_y Cuts at: 1493 2638 2750 2983 3209 3361 5470 1493 Size: 1145 112 233 226 152 2109 1697 Fragments arranged by size: 2109 1697 1145 233 226 152 112 AseI AT'TA_AT Cuts at: 160 1032 4228 160 Size: 872 3196 1606 Fragments arranged by size: 3196 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5674 AvaI C'yCGr_G Cuts at: 1870 1943 2999 1870 Size: 73 1056 4545 Fragments arranged by size: 4545 1056 73 BamHI G'GATC_C Cuts at: 2158 2425 3004 3371 2158 Size: 267 579 367 4461 Fragments arranged by size: 4461 579 367 267 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2995 4450 618 Size: 325 217 627 1208 1455 1842 Fragments arranged by size: 1842 1455 1208 627 325 217 BanII G_rGCy'C Cuts at: 1391 2900 2993 1391 Size: 1509 93 4072 Fragments arranged by size: 4072 1509 93 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2882 928 Size: 971 983 3720 Fragments arranged by size: 3720 983 971 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3865 3899 1903 Size: 34 1928 34 3678 Fragments arranged by size: 3678 1928 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3566 4776 3566 Size: 1210 4464 BclI T'GATC_A Cuts at: 1548 2533 1548 Size: 985 4689 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4285 136 Size: 107 122 71 631 605 2613 1525 Fragments arranged by size: 2613 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2940 5669 2940 Size: 2729 2945 BlpI GC'TnA_GC Cuts at: 3091 3091 Size: 5674 Bme1580I G_kGCm'C Cuts at: 1790 2453 3735 4891 1790 Size: 663 1282 1156 2573 Fragments arranged by size: 2573 1282 1156 663 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5674 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3405 4363 442 Size: 416 53 83 399 24 1988 958 1753 Fragments arranged by size: 1988 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5674 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2919 2919 Size: 5674 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4334 1239 Size: 3095 2579 Bpu10I CC'TnA_GC Cuts at: 2177 2337 2177 Size: 160 5514 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2629 3799 4664 4962 2629 Size: 1170 865 298 3341 Fragments arranged by size: 3341 1170 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2499 4337 882 Size: 617 1000 1838 2219 Fragments arranged by size: 2219 1838 1000 617 BsaAI yAC'GTr Cuts at: 493 1204 3465 493 Size: 711 2261 2702 Fragments arranged by size: 2702 2261 711 BsaBI GATnn'nnATC Cuts at: 5668 5668 Size: 5674 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2045 2053 3481 3863 Size: 53 83 186 936 512 8 1428 382 Cuts at: 3863 4498 275 Size: 635 1451 Fragments arranged by size: 1451 1428 936 635 512 382 186 83 53 8 BsaWI w'CCGG_w Cuts at: 4107 4505 4779 4926 5337 4107 Size: 398 274 147 411 4444 Fragments arranged by size: 4444 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5449 Fragments arranged by size: 5449 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5674 BseYI C'CCAG_C Cuts at: 2171 2679 4877 5373 2171 Size: 508 2198 496 2472 Fragments arranged by size: 2472 2198 508 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2574 1163 Size: 573 838 4263 Fragments arranged by size: 4263 838 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3124 3885 4913 1540 Size: 275 186 1123 761 1028 2301 Fragments arranged by size: 2301 1123 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2453 3735 3820 4891 2453 Size: 1282 85 1071 3236 Fragments arranged by size: 3236 1282 1071 85 BsmI GAATG_Cn' Cuts at: 3185 3278 3185 Size: 93 5581 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2453 2900 2993 3735 3820 4891 1391 Size: 399 663 447 93 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 663 447 399 93 85 BspEI T'CCGG_A Cuts at: 5337 5337 Size: 5674 BspHI T'CATG_A Cuts at: 3563 5293 3563 Size: 1730 3944 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2094 3029 844 Size: 1250 935 3489 Fragments arranged by size: 3489 1250 935 BsrBI CCG'CTC Cuts at: 1394 1823 2027 3561 1394 Size: 429 204 1534 3507 Fragments arranged by size: 3507 1534 429 204 BsrDI GCAATG_nn' Cuts at: 65 1248 4169 4343 65 Size: 1183 2921 174 1396 Fragments arranged by size: 2921 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4318 4505 1700 Size: 110 2508 187 2869 Fragments arranged by size: 2869 2508 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5674 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5674 BssSI C'ACGA_G Cuts at: 3734 4746 3734 Size: 1012 4662 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5674 BstBI TT'CG_AA Cuts at: 4478 4478 Size: 5674 BstEII G'GTnAC_C Cuts at: 1184 2647 1184 Size: 1463 4211 BstXI CCAn_nnnn'nTGG Cuts at: 2507 2908 2507 Size: 401 5273 BstYI r'GATC_y Cuts at: 1972 2158 2425 2940 3004 3371 3756 3773 5225 Size: 186 267 515 64 367 385 17 1452 Cuts at: 5225 5311 5323 5669 1972 Size: 86 12 346 1977 Fragments arranged by size: 1977 1452 515 385 367 346 267 186 86 64 17 12 Bsu36I CC'TnA_GG Cuts at: 2527 2527 Size: 5674 BtgI C'CryG_G Cuts at: 513 1065 2056 513 Size: 552 991 4131 Fragments arranged by size: 4131 991 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2113 2283 487 Size: 683 56 887 170 3878 Fragments arranged by size: 3878 887 683 170 56 BtsI GCAGTG_nn' Cuts at: 2292 2312 3190 3984 4004 2292 Size: 20 878 794 20 3962 Fragments arranged by size: 3962 878 794 20 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5674 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5639 DraI TTT'AAA Cuts at: 2978 2978 Size: 5674 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4681 809 Size: 507 3365 1802 Fragments arranged by size: 3365 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3121 4010 5639 Size: 54 1425 50 275 18 1291 889 1629 Cuts at: 5639 8 Size: 43 Fragments arranged by size: 1629 1425 1291 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3121 1537 Size: 275 1309 4090 Fragments arranged by size: 4090 1309 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2841 3604 1353 Size: 1488 763 3423 Fragments arranged by size: 3423 1488 763 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4261 4635 4781 387 Size: 1064 138 2672 374 146 1280 Fragments arranged by size: 2672 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2505 2869 2876 3737 4334 5121 5389 Size: 393 873 364 7 861 597 787 268 Cuts at: 5389 1239 Size: 1524 Fragments arranged by size: 1524 873 861 787 597 393 364 268 7 EcoRI G'AATT_C Cuts at: 2983 3361 2983 Size: 378 5296 FspI TGC'GCA Cuts at: 4180 4180 Size: 5674 HaeII r_GCGC'y Cuts at: 1678 4821 1678 Size: 3143 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2562 2594 4315 4347 4389 Size: 32 135 32 990 32 1721 32 42 Cuts at: 4389 4421 1373 Size: 32 2626 Fragments arranged by size: 2626 1721 990 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2662 3018 3264 669 Size: 988 281 724 356 246 3079 Fragments arranged by size: 3079 988 724 356 281 246 HindIII A'AGCT_T Cuts at: 748 2191 748 Size: 1443 4231 HpaI GTT'AAC Cuts at: 3264 3264 Size: 5674 KpnI G_GTAC'C Cuts at: 2999 2999 Size: 5674 MfeI C'AATT_G Cuts at: 3273 3273 Size: 5674 MluI A'CGCG_T Cuts at: 5550 5550 Size: 5674 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2416 2453 4788 4972 1305 Size: 1111 37 2335 184 2007 Fragments arranged by size: 2335 2007 1111 184 37 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3852 Fragments arranged by size: 3852 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2730 2906 3632 3991 4150 518 Size: 648 1564 176 726 359 159 2042 Fragments arranged by size: 2042 1564 726 648 359 176 159 MspA1I CmG'CkG Cuts at: 1606 3090 3767 4915 5160 1606 Size: 1484 677 1148 245 2120 Fragments arranged by size: 2120 1484 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5122 NdeI CA'TA_TG Cuts at: 387 387 Size: 5674 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5674 NotI GC'GGCC_GC Cuts at: 3121 3121 Size: 5674 NspI r_CATG'y Cuts at: 1132 1229 2249 3032 4577 1132 Size: 97 1020 783 1545 2229 Fragments arranged by size: 2229 1545 1020 783 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5674 PciI A'CATG_T Cuts at: 2245 4573 2245 Size: 2328 3346 PflMI CCAn_nnn'nTGG Cuts at: 1108 2435 1108 Size: 1327 4347 PmeI GTTT'AAAC Cuts at: 2978 2978 Size: 5674 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2235 2267 3743 3775 5256 5288 2235 Size: 32 1476 32 1481 32 2621 Fragments arranged by size: 2621 1481 1476 32 32 32 PshAI GACnn'nnGTC Cuts at: 1613 2886 1613 Size: 1273 4401 PsiI TTA'TAA Cuts at: 3244 3244 Size: 5674 PstI C_TGCA'G Cuts at: 830 2283 2308 3026 830 Size: 1453 25 718 3478 Fragments arranged by size: 3478 1453 718 25 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5674 SalI G'TCGA_C Cuts at: 1936 3016 1936 Size: 1080 4594 SbfI CC_TGCA'GG Cuts at: 3026 3026 Size: 5674 ScaI AGT'ACT Cuts at: 3922 5634 3922 Size: 1712 3962 SfcI C'TryA_G Cuts at: 826 1045 2260 2279 2304 2665 3022 4157 4838 Size: 219 1215 19 25 361 357 1135 681 Cuts at: 4838 5029 826 Size: 191 1471 Fragments arranged by size: 1471 1215 1135 681 361 357 219 191 25 19 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5674 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5674 SmaI CCC'GGG Cuts at: 1872 3001 1872 Size: 1129 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2608 2686 3778 4679 4941 820 Size: 197 926 665 78 1092 901 262 1553 Fragments arranged by size: 1553 1092 926 901 665 262 197 78 SnaBI TAC'GTA Cuts at: 493 3465 493 Size: 2972 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5674 SphI G_CATG'C Cuts at: 1132 3032 1132 Size: 1900 3774 SspI AAT'ATT Cuts at: 5 52 2154 3598 5 Size: 47 2102 1444 2081 Fragments arranged by size: 2102 2081 1444 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5674 StyI C'CwwG_G Cuts at: 513 1065 3113 513 Size: 552 2048 3074 Fragments arranged by size: 3074 2048 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3701 3718 3871 4056 4501 325 Size: 1255 2121 17 153 185 445 1498 Fragments arranged by size: 2121 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3920 5632 96 Size: 274 80 33 51 1443 1943 1712 138 Fragments arranged by size: 1943 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5634 5666 5634 Size: 32 5642 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5674 XbaI T'CTAG_A Cuts at: 3010 3010 Size: 5674 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5674 XmaI C'CCGG_G Cuts at: 1870 2999 1870 Size: 1129 4545 XmnI GAAnn'nnTTC Cuts at: 3803 3803 Size: 5674 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3482 276 Size: 53 83 186 936 1948 2468 Fragments arranged by size: 2468 1948 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BsiWI BsmBI BstZ17I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI