Result of FASTA (ccds) for
pFN21AE0910
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0910, 231 aa
1>>>pF1KE0910 231 - 231 aa - 231 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3303+/-0.00086; mu= 13.3362+/- 0.051
mean_var=56.6259+/-11.715, 0's: 0 Z-trim(105.3): 24 B-trim: 369 in 1/51
Lambda= 0.170438
statistics sampled from 8339 (8347) to 8339 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.256), width: 16
Scan time: 1.730
The best scores are: opt bits E(32554)
CCDS4481.1 NQO2 gene_id:4835|Hs108|chr6 ( 231) 1569 393.9 4.6e-110
CCDS10883.1 NQO1 gene_id:1728|Hs108|chr16 ( 274) 743 190.8 7.5e-49
CCDS75388.1 NQO2 gene_id:4835|Hs108|chr6 ( 193) 657 169.6 1.3e-42
CCDS32472.1 NQO1 gene_id:1728|Hs108|chr16 ( 240) 463 121.9 3.5e-28
CCDS32471.1 NQO1 gene_id:1728|Hs108|chr16 ( 236) 315 85.5 3.1e-17
CCDS67067.1 NQO1 gene_id:1728|Hs108|chr16 ( 202) 314 85.3 3.2e-17
>>CCDS4481.1 NQO2 gene_id:4835|Hs108|chr6 (231 aa)
initn: 1569 init1: 1569 opt: 1569 Z-score: 2089.4 bits: 393.9 E(32554): 4.6e-110
Smith-Waterman score: 1569; 99.6% identity (100.0% similar) in 231 aa overlap (1-231:1-231)
10 20 30 40 50 60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS44 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
130 140 150 160 170 180
190 200 210 220 230
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
190 200 210 220 230
>>CCDS10883.1 NQO1 gene_id:1728|Hs108|chr16 (274 aa)
initn: 747 init1: 722 opt: 743 Z-score: 990.5 bits: 190.8 E(32554): 7.5e-49
Smith-Waterman score: 743; 48.9% identity (76.5% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
:.:...::: ::.: ::: ..:..:. :...: :. ::::::::.: . ::::: :
CCDS10 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
..: :.: .:. :::. :. ::. ::::.. :::::::::: ::.::::::::..::
CCDS10 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
. ::. ..::.: ...: :.::.::::.. ::. :..:: .:::.: : ::::
CCDS10 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
130 140 150 160 170 180
190 200 210 220 230
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
::.:: ::.... . . : .. .:..::..:: : :.
CCDS10 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
190 200 210 220 230 240
CCDS10 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
250 260 270
>>CCDS75388.1 NQO2 gene_id:4835|Hs108|chr6 (193 aa)
initn: 656 init1: 656 opt: 657 Z-score: 878.7 bits: 169.6 E(32554): 1.3e-42
Smith-Waterman score: 1199; 83.1% identity (83.5% similar) in 231 aa overlap (1-231:1-193)
10 20 30 40 50 60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS75 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
:::::::::::::::::::::::::::::::::::::::::
CCDS75 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQ-------------------
70 80 90 100
130 140 150 160 170 180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
:::::::::::::::::::::::::::::::::::::::::
CCDS75 -------------------GKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
110 120 130 140
190 200 210 220 230
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
150 160 170 180 190
>>CCDS32472.1 NQO1 gene_id:1728|Hs108|chr16 (240 aa)
initn: 577 init1: 442 opt: 463 Z-score: 619.3 bits: 121.9 E(32554): 3.5e-28
Smith-Waterman score: 552; 41.6% identity (64.7% similar) in 221 aa overlap (1-221:1-187)
10 20 30 40 50 60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
:.:...::: ::.: ::: ..:..:. :...: :. ::::::::.: . ::::: :
CCDS32 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
..: :.: .:. :::. :. ::. ::::.. :::::::::: ::.::::::::..::
CCDS32 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
. ::. ..::.: :.. : ::::
CCDS32 FIGEFAYTYAAMYDKG----------------------------------PFRSGILHFC
130 140
190 200 210 220 230
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
::.:: ::.... . . : .. .:..::..:: : :.
CCDS32 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
150 160 170 180 190 200
CCDS32 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
210 220 230 240
>>CCDS32471.1 NQO1 gene_id:1728|Hs108|chr16 (236 aa)
initn: 597 init1: 313 opt: 315 Z-score: 422.8 bits: 85.5 E(32554): 3.1e-17
Smith-Waterman score: 509; 39.8% identity (62.9% similar) in 221 aa overlap (1-221:1-183)
10 20 30 40 50 60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
:.:...::: ::.: ::: ..:..:. :...: :. ::::::::.: . ::::: :
CCDS32 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
..: :.: .:. :::. :. ::. ::::.. :::::::
CCDS32 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQ-------------------
70 80 90 100
130 140 150 160 170 180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
.: :.::.::::.. ::. :..:: .:::.: : ::::
CCDS32 -------------------SKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
110 120 130 140
190 200 210 220 230
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
::.:: ::.... . . : .. .:..::..:: : :.
CCDS32 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
150 160 170 180 190 200
CCDS32 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
210 220 230
>>CCDS67067.1 NQO1 gene_id:1728|Hs108|chr16 (202 aa)
initn: 474 init1: 314 opt: 314 Z-score: 422.6 bits: 85.3 E(32554): 3.2e-17
Smith-Waterman score: 314; 49.5% identity (74.8% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
:.:...::: ::.: ::: ..:..:. :...: :. ::::::::.: . ::::: :
CCDS67 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
..: :.: .:. :::. :. ::. ::::.. ::::::: . :
CCDS67 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQSGILHFCGFQVLEPQLTYS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
CCDS67 IGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMKKEVQDEEKNKKF
130 140 150 160 170 180
231 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:27:30 2016 done: Sat Nov 5 04:27:30 2016
Total Scan time: 1.730 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]