FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4231, 815 aa 1>>>pF1KE4231 815 - 815 aa - 815 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0085+/-0.000905; mu= 12.3859+/- 0.055 mean_var=99.4603+/-20.332, 0's: 0 Z-trim(107.9): 43 B-trim: 0 in 0/51 Lambda= 0.128602 statistics sampled from 9835 (9873) to 9835 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.303), width: 16 Scan time: 4.360 The best scores are: opt bits E(32554) CCDS1515.1 KCTD3 gene_id:51133|Hs108|chr1 ( 815) 5399 1012.6 0 CCDS12560.1 SHKBP1 gene_id:92799|Hs108|chr19 ( 707) 2795 529.4 7.9e-150 >>CCDS1515.1 KCTD3 gene_id:51133|Hs108|chr1 (815 aa) initn: 5399 init1: 5399 opt: 5399 Z-score: 5413.4 bits: 1012.6 E(32554): 0 Smith-Waterman score: 5399; 99.9% identity (99.9% similar) in 815 aa overlap (1-815:1-815) 10 20 30 40 50 60 pF1KE4 MAGGHCGSVPAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFFSSLLSGRISTLRDETG :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 MAGGHCGSFPAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFFSSLLSGRISTLRDETG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 AIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGITPLVRRLLLCEELERSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 AIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGITPLVRRLLLCEELERSSC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 GSVLFHGYLPPPGIPSRKINNTVRSADSRNGLNSTEGEARGNGTQPVLSGTGEETVRLGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 GSVLFHGYLPPPGIPSRKINNTVRSADSRNGLNSTEGEARGNGTQPVLSGTGEETVRLGF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 PVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQQVFTSPYLDWTIERVALNAKVVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 PVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQQVFTSPYLDWTIERVALNAKVVG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 GPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVFSLGVPVDALFFIGNQLVATSHTGKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 GPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVFSLGVPVDALFFIGNQLVATSHTGKV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 GVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCNNGSIYYIDMQKFPLRMKDNDLLVTELY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 GVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCNNGSIYYIDMQKFPLRMKDNDLLVTELY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 HDPSNDAITALSVYLTPKTSVSGNWIEIAYGTSSGAVRVIVQHPETVGSGPQLFQTFTVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 HDPSNDAITALSVYLTPKTSVSGNWIEIAYGTSSGAVRVIVQHPETVGSGPQLFQTFTVH 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 RSPVTKIMLSEKHLVSVCADNNHVRTWTVTRFRGMISTQPGSTPLASFKILSLEETESHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 RSPVTKIMLSEKHLVSVCADNNHVRTWTVTRFRGMISTQPGSTPLASFKILSLEETESHG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 SYSSGNDIGPFGERDDQQVFIQKVVPITNKLFVRLSSTGKRICEIQAVDCTTISSFTVRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 SYSSGNDIGPFGERDDQQVFIQKVVPITNKLFVRLSSTGKRICEIQAVDCTTISSFTVRE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 CEGSSRMGSRPRRYLFTGHTNGSIQMWDLTTAMDMVNKSEDKDVGGPTEEELLKLLDQCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 CEGSSRMGSRPRRYLFTGHTNGSIQMWDLTTAMDMVNKSEDKDVGGPTEEELLKLLDQCD 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE4 LSTSRCATPNISPATSVVQHSHLRESNSSLQLQHHDTTHEAATYGSMRPYRESPLLARAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 LSTSRCATPNISPATSVVQHSHLRESNSSLQLQHHDTTHEAATYGSMRPYRESPLLARAR 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE4 RTESFHSYRDFQTINLNRNVERAVPENGNLGPIQAEVKGATGECNISERKSPGVEIKSLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 RTESFHSYRDFQTINLNRNVERAVPENGNLGPIQAEVKGATGECNISERKSPGVEIKSLR 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE4 ELDSGLEVHKIAEGFSESKKRSSEDENENKIEFRKKGGFEGGGFLGRKKVPYLASSPSTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 ELDSGLEVHKIAEGFSESKKRSSEDENENKIEFRKKGGFEGGGFLGRKKVPYLASSPSTS 730 740 750 760 770 780 790 800 810 pF1KE4 DGGTDSPGTASPSPTKTTPSPRHKKSDSSGQEYSL ::::::::::::::::::::::::::::::::::: CCDS15 DGGTDSPGTASPSPTKTTPSPRHKKSDSSGQEYSL 790 800 810 >>CCDS12560.1 SHKBP1 gene_id:92799|Hs108|chr19 (707 aa) initn: 2817 init1: 2101 opt: 2795 Z-score: 2803.3 bits: 529.4 E(32554): 7.9e-150 Smith-Waterman score: 2810; 65.9% identity (83.3% similar) in 657 aa overlap (17-661:18-657) 10 20 30 40 50 pF1KE4 MAGGHCGSVPAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFFSSLLSGRISTLRDET ::...::::: ::::::::: ::::::::::::::::::.::: CCDS12 MAAAATAAEGVPSRGPPGEVIHLNVGGKRFSTSRQTLTWIPDSFFSSLLSGRISTLKDET 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 GAIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGITPLVRRLLLCEELERSS :::::::::..:::::::::::::: ::: . : :::.:::.::::::: : :::.::: CCDS12 GAIFIDRDPTVFAPILNFLRTKELDPRGVHGSSLLHEAQFYGLTPLVRRLQLREELDRSS 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 CGSVLFHGYLPPPGIPSRKINNTVRSADSRNGLNSTEGEARGNGTQPVLSGTGEETVRL- ::.:::.:::::: .: .. : .: . . :.. . .: ..:.: :.. :. CCDS12 CGNVLFNGYLPPPVFPVKRRNR--HSLVGPQQLGGRPAPVRRSNTMPPNLGNAGLLGRML 130 140 150 160 170 180 190 200 210 220 pF1KE4 ---------GFPVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQQVFTSPYLDWTI : : .: : .: ::::::..::..: ::::.::.:::: ::.:: ::: : CCDS12 DEKTPPSPSGQPEEPGMVRLVCGHHNWIAVAYTQFLVCYRLKEASGWQLVFSSPRLDWPI 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE4 ERVALNAKVVGGPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVFSLGVPVDALFFIGN ::.::.:.: :: :..:::::.:. : :.::..: :.::::::: :::::.::::.:: CCDS12 ERLALTARVHGGALGEHDKMVAAATGSEILLWALQAEGGGSEIGVFHLGVPVEALFFVGN 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE4 QLVATSHTGKVGVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCNNGSIYYIDMQKFPLRM ::.::::::..:::::::.:::::.: ::::::.::::::::::::::::.:.::::::: CCDS12 QLIATSHTGRIGVWNAVTKHWQVQEVQPITSYDAAGSFLLLGCNNGSIYYVDVQKFPLRM 300 310 320 330 340 350 350 360 370 380 390 400 pF1KE4 KDNDLLVTELYHDPSNDAITALSVYLTPKTSVSGNWIEIAYGTSSGAVRVIVQHPETVGS :::::::.:::.::..:..:::::::::::: ::::::::::::::.::::::::::::: CCDS12 KDNDLLVSELYRDPAEDGVTALSVYLTPKTSDSGNWIEIAYGTSSGGVRVIVQHPETVGS 360 370 380 390 400 410 410 420 430 440 450 460 pF1KE4 GPQLFQTFTVHRSPVTKIMLSEKHLVSVCADNNHVRTWTVTRFRGMISTQPGSTPLASFK :::::::::::::::::::::::::.::::::::::::.::::::::::::::::::::: CCDS12 GPQLFQTFTVHRSPVTKIMLSEKHLISVCADNNHVRTWSVTRFRGMISTQPGSTPLASFK 420 430 440 450 460 470 470 480 490 500 510 520 pF1KE4 ILSLEETESHGSYSSGNDIGPFGERDDQQVFIQKVVPITNKLFVRLSSTGKRICEIQAVD ::.:: ...::. :.::::::.::::::::::::::: ...:::::::::.:.: ...:: CCDS12 ILALESADGHGGCSAGNDIGPYGERDDQQVFIQKVVPSASQLFVRLSSTGQRVCSVRSVD 480 490 500 510 520 530 530 540 550 560 570 580 pF1KE4 CTTISSFTVRECEGSSRMGSRPRRYLFTGHTNGSIQMWDLTTAMDMVNKSEDKDVGGPTE . ..::: ::::: :.::::::::.::..:::. ::::::::: .... .:: :: CCDS12 GSPTTAFTVLECEGSRRLGSRPRRYLLTGQANGSLAMWDLTTAMDGLGQAP---AGGLTE 540 550 560 570 580 590 590 600 610 620 630 640 pF1KE4 EELLKLLDQCDLSTSRCATPNISPATSVVQHSHLRESNSSLQLQHHDTTHEAATYGSMRP .::.. :..:.:. : :: :. . . : . ..: . : :.. :. CCDS12 QELMEQLEHCELA------P---PAPSAPSWGCLPSPSPRISL---TSLHSASSNTSLSG 600 610 620 630 640 650 660 670 680 690 700 pF1KE4 YR--ESPLLARARRTESFHSYRDFQTINLNRNVERAVPENGNLGPIQAEVKGATGECNIS .: :: :.::: CCDS12 HRGSPSPPQAEARRRGGGSFVERCQELVRSGPDLRRPPTPAPWPSSGLGTPLTPPKMKLN 650 660 670 680 690 700 815 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:28:24 2016 done: Sun Nov 6 01:28:24 2016 Total Scan time: 4.360 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]