FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0906, 212 aa
  1>>>pF1KE0906 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5407+/-0.00073; mu= 10.5739+/- 0.044
 mean_var=130.0431+/-25.993, 0's: 0 Z-trim(114.1): 6  B-trim: 145 in 1/51
 Lambda= 0.112468
 statistics sampled from 14675 (14678) to 14675 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.451), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS486.2 MED8 gene_id:112950|Hs108|chr1           ( 301) 1412 239.3 1.9e-63
CCDS60108.1 MED8 gene_id:112950|Hs108|chr1         ( 179) 1186 202.4 1.4e-52
CCDS487.2 MED8 gene_id:112950|Hs108|chr1           ( 268) 1186 202.6 1.9e-52


>>CCDS486.2 MED8 gene_id:112950|Hs108|chr1                (301 aa)
 initn: 1412 init1: 1412 opt: 1412  Z-score: 1252.4  bits: 239.3 E(32554): 1.9e-63
Smith-Waterman score: 1412; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:90-301)

                                             10        20        30
pF1KE0                               MRQTEGRVPVFSHEVVPDHLRTKPDPEVEE
                                     ::::::::::::::::::::::::::::::
CCDS48 NKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEE
      60        70        80        90       100       110         

               40        50        60        70        80        90
pF1KE0 QEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTN
     120       130       140       150       160       170         

              100       110       120       130       140       150
pF1KE0 ALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGV
     180       190       200       210       220       230         

              160       170       180       190       200       210
pF1KE0 QMAQAGQPGKMPSGIKTNIKSASMHPYQRPSCLGFILAIPLRRKVKKLLGQEGKKNAHLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QMAQAGQPGKMPSGIKTNIKSASMHPYQRPSCLGFILAIPLRRKVKKLLGQEGKKNAHLQ
     240       250       260       270       280       290         

         
pF1KE0 LW
       ::
CCDS48 LW
     300 

>>CCDS60108.1 MED8 gene_id:112950|Hs108|chr1              (179 aa)
 initn: 1186 init1: 1186 opt: 1186  Z-score: 1057.2  bits: 202.4 E(32554): 1.4e-52
Smith-Waterman score: 1186; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KE0 MRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LLEKISKEERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LLEKISKEERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSASMHPYQRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS60 AGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSASMHPYQR 
              130       140       150       160       170          

              190       200       210  
pF1KE0 SCLGFILAIPLRRKVKKLLGQEGKKNAHLQLW

>>CCDS487.2 MED8 gene_id:112950|Hs108|chr1                (268 aa)
 initn: 1186 init1: 1186 opt: 1186  Z-score: 1054.9  bits: 202.6 E(32554): 1.9e-52
Smith-Waterman score: 1186; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:90-268)

                                             10        20        30
pF1KE0                               MRQTEGRVPVFSHEVVPDHLRTKPDPEVEE
                                     ::::::::::::::::::::::::::::::
CCDS48 NKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEE
      60        70        80        90       100       110         

               40        50        60        70        80        90
pF1KE0 QEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTN
     120       130       140       150       160       170         

              100       110       120       130       140       150
pF1KE0 ALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGV
     180       190       200       210       220       230         

              160       170       180       190       200       210
pF1KE0 QMAQAGQPGKMPSGIKTNIKSASMHPYQRPSCLGFILAIPLRRKVKKLLGQEGKKNAHLQ
       :::::::::::::::::::::::::::::                               
CCDS48 QMAQAGQPGKMPSGIKTNIKSASMHPYQR                               
     240       250       260                                       




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:25:40 2016 done: Sat Nov  5 04:25:40 2016
 Total Scan time:  2.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]