Result of FASTA (omim) for
pFN21AE0677
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0677, 263 aa
1>>>pF1KE0677 263 - 263 aa - 263 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3272+/-0.000276; mu= 7.7819+/- 0.017
mean_var=167.3163+/-33.773, 0's: 0 Z-trim(123.9): 272 B-trim: 159 in 2/59
Lambda= 0.099153
statistics sampled from 44258 (44587) to 44258 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.523), width: 16
Scan time: 8.620
The best scores are: opt bits E(85289)
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 1786 266.4 3.8e-71
XP_011538391 (OMIM: 606701) PREDICTED: dorsal root ( 298) 1268 192.3 8.5e-49
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 422 71.4 2.9e-12
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 403 68.8 2.4e-11
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 360 62.5 1.2e-09
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 356 61.8 1.3e-09
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326) 356 61.9 1.7e-09
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284) 348 60.7 3.4e-09
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 352 61.5 3.5e-09
NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 352 61.5 3.5e-09
NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 352 61.5 3.5e-09
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314) 348 60.7 3.6e-09
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401) 343 60.1 7.2e-09
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 335 58.7 9e-09
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 335 58.8 1.1e-08
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193) 332 58.3 1.3e-08
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 336 59.1 1.3e-08
NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 332 58.4 1.5e-08
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198) 330 58.0 1.6e-08
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 330 58.0 1.7e-08
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286) 332 58.4 1.7e-08
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286) 332 58.4 1.7e-08
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 330 58.1 1.8e-08
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422) 332 58.6 2.2e-08
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422) 332 58.6 2.2e-08
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422) 332 58.6 2.2e-08
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422) 332 58.6 2.2e-08
NP_001245392 (OMIM: 106210,120430,136520,148190,16 ( 436) 332 58.6 2.3e-08
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436) 332 58.6 2.3e-08
NP_001297087 (OMIM: 106210,120430,136520,148190,16 ( 436) 332 58.6 2.3e-08
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436) 332 58.6 2.3e-08
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302) 328 57.9 2.6e-08
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 330 58.3 2.6e-08
NP_001186699 (OMIM: 600036) homeobox protein OTX1 ( 354) 329 58.1 2.6e-08
NP_055377 (OMIM: 600036) homeobox protein OTX1 [Ho ( 354) 329 58.1 2.6e-08
NP_003021 (OMIM: 602504) short stature homeobox pr ( 355) 329 58.1 2.6e-08
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 330 58.3 2.6e-08
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 330 58.3 3e-08
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 330 58.3 3e-08
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 330 58.3 3e-08
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325) 327 57.8 3e-08
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 330 58.4 3.1e-08
NP_000545 (OMIM: 120970,268000,602225,613829) cone ( 299) 325 57.4 3.4e-08
NP_006875 (OMIM: 602504) short stature homeobox pr ( 331) 321 56.9 5.5e-08
XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377) 314 56.0 1.2e-07
NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377) 314 56.0 1.2e-07
XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377) 314 56.0 1.2e-07
NP_671725 (OMIM: 607410) diencephalon/mesencephalo ( 382) 314 56.0 1.2e-07
NP_001257453 (OMIM: 600037,610125,613986) homeobox ( 289) 308 55.0 1.8e-07
NP_001257452 (OMIM: 600037,610125,613986) homeobox ( 289) 308 55.0 1.8e-07
>>NP_001263380 (OMIM: 606701) dorsal root ganglia homeob (263 aa)
initn: 1786 init1: 1786 opt: 1786 Z-score: 1398.2 bits: 266.4 E(85289): 3.8e-71
Smith-Waterman score: 1786; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263)
10 20 30 40 50 60
pF1KE0 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKP
190 200 210 220 230 240
250 260
pF1KE0 APPDGSQEKTSPTKEQSEAEKSV
:::::::::::::::::::::::
NP_001 APPDGSQEKTSPTKEQSEAEKSV
250 260
>>XP_011538391 (OMIM: 606701) PREDICTED: dorsal root gan (298 aa)
initn: 1261 init1: 1261 opt: 1268 Z-score: 997.0 bits: 192.3 E(85289): 8.5e-49
Smith-Waterman score: 1683; 88.1% identity (88.1% similar) in 295 aa overlap (4-263:4-298)
10 20 30 40 50 60
pF1KE0 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDV
10 20 30 40 50 60
70 80
pF1KE0 FTREELAMKINLTEARVQ-----------------------------------VWFQNRR
:::::::::::::::::: :::::::
XP_011 FTREELAMKINLTEARVQLANSCLKTELQIEINDTIIEHSEVEDHNFSLKGARVWFQNRR
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE0 AKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGP
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE0 AGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTAS
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE0 VATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV
250 260 270 280 290
>>NP_068745 (OMIM: 605420,609597,613451,615529) homeobox (411 aa)
initn: 409 init1: 330 opt: 422 Z-score: 341.2 bits: 71.4 E(85289): 2.9e-12
Smith-Waterman score: 422; 42.2% identity (62.3% similar) in 199 aa overlap (32-220:213-407)
10 20 30 40 50 60
pF1KE0 FYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVF
:.:::::::: ::: :: :: .::::::.
NP_068 KEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVY
190 200 210 220 230 240
70 80 90 100 110 120
pF1KE0 TREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPP
.::.:::. .::::::::::::::::::: :: .. :. .. : : .: :
NP_068 AREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQ
250 260 270 280 290 300
130 140 150 160 170
pF1KE0 PGDQARSKKEALEAQQSLGRTVGPAGPFFPSCL------PGTLLNTAT----YAQALSHV
. . ... : . . : : : :.:. ::. ...: . : :::
NP_068 IQNPSWLGNNG--AASPVPACVVPCDPV-PACMSPHAHPPGSGASSVTDFLSVSGAGSHV
310 320 330 340 350
180 190 200 210 220 230
pF1KE0 ASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTS
.. . : : . .: ::. : . .:.:.:.:::::.::: :.
NP_068 GQTHMGSLFGAASLSP-GLNGYELNGEPDRKTSSIAALRMKAKEHSAAISWAT
360 370 380 390 400 410
240 250 260
pF1KE0 SSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV
>>NP_620689 (OMIM: 300004,300215,300382,300419,308350,30 (562 aa)
initn: 420 init1: 348 opt: 403 Z-score: 324.7 bits: 68.8 E(85289): 2.4e-11
Smith-Waterman score: 456; 40.9% identity (61.1% similar) in 247 aa overlap (20-232:314-557)
10 20 30 40
pF1KE0 MFYFHCPPQLEGTATFGNHSSG-DFDDGFLRRKQRRNRTTFTLQQLEAL
:.: : ..:.:.::::: ::::: ::: :
NP_620 TEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEEL
290 300 310 320 330 340
50 60 70 80 90 100
pF1KE0 EAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER-GASDQEPGAKEP--
: .: .::::::::::::::...::::::::::::::::::: :. ::. . :: :
NP_620 ERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPFPGP
350 360 370 380 390 400
110 120 130 140 150 160
pF1KE0 MAEVTP-PPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFP--SCLP--GTLLN
.. . : : . . :: : .. : : . . .. :. : : . :: :. :.
NP_620 LSATHPLSPYLDASPFPPHHPALDS--AWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLG
410 420 430 440 450 460
170 180 190
pF1KE0 TATY--AQALSHVASLKGG---------PLCSCCV-------PDPM-------GLSFLPT
.:. : .. : : .. . :: : . : : : :.
NP_620 LSTFLGAAVFRHPAFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASGALADPA
470 480 490 500 510 520
200 210 220 230 240 250
pF1KE0 YGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKPAPPDGSQEKTSPTKE
. . :..:.:.::.::.::. : : . :.::.::.
NP_620 TAAADRRASSIAALRLKAKEHA-AQLTQLNILPGTSTGKEVC
530 540 550 560
260
pF1KE0 QSEAEKSV
>>NP_006483 (OMIM: 136760,606014) homeobox protein arist (343 aa)
initn: 382 init1: 329 opt: 360 Z-score: 294.3 bits: 62.5 E(85289): 1.2e-09
Smith-Waterman score: 385; 39.1% identity (65.0% similar) in 197 aa overlap (30-215:150-334)
10 20 30 40 50
pF1KE0 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPD
. :.:::::::. ::: :: :: .:::::
NP_006 NLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPD
120 130 140 150 160 170
60 70 80 90 100 110
pF1KE0 VFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINS
:..::.::.. .::::::::::::::::::: :: .. :: ...:.. . .:.
NP_006 VYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQE--GRNPFTAA-----YDISV
180 190 200 210 220 230
120 130 140 150 160 170
pF1KE0 PPPGDQARSKKEALEAQQSLGRTVGPAGPFF--PSCLPGTLLNTATYAQALSHVASLKGG
: :. . ...: :. . : .:.:: . : .:. .. :.. . ::.. :
NP_006 LPRTDSHPQLQNSLWASPGSG---SPGGPCLVSPEGIPSPCMS--PYSHPHGSVAGFMGV
240 250 260 270 280
180 190 200 210 220
pF1KE0 PLCSCCVPDPMGL-SFLPTYGCQS--------NRTASVATLRMKAREHSEAVLQSANLLP
: : : ... .: :: : .: .. :...::.: .:
NP_006 PAPSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
290 300 310 320 330 340
230 240 250 260
pF1KE0 STSSSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV
>>XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX home (231 aa)
initn: 355 init1: 316 opt: 356 Z-score: 293.4 bits: 61.8 E(85289): 1.3e-09
Smith-Waterman score: 356; 38.2% identity (62.3% similar) in 212 aa overlap (22-220:25-227)
10 20 30 40 50
pF1KE0 MFYFHCPPQLEGTATFGNHSSGD-FDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTH
:: :.. :.::.::::: ::: :: :: .::
XP_011 MDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 YPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRN
::::..::.::.. .::::::::::::::::::: :: .. :. :: .: . .
XP_011 YPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQ--AKSHFAA-----TYD
70 80 90 100 110
120 130 140 150 160
pF1KE0 INSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFP----SCL-PGTLL--NTATYAQALS
:. : :. . .. : : .. : .: .. ..: ::. : . . ..:. .
XP_011 ISVLPRTDSYPQIQNNLWAGNASGGSV-VTSCMLPRDTSSCMTPYSHSPRTDSSYTGFSN
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE0 HVASLKGGPLCSCCVPDPM-----GLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSA
: ... :: . . . . : .: : :..:.:.:::::.::. .
XP_011 HQNQFSHVPLNNFFTDSLLTGATNGHAF-ETKPEFERRSSSIAVLRMKAKEHTANISWAM
180 190 200 210 220 230
230 240 250 260
pF1KE0 NLLPSTSSSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV
>>NP_008913 (OMIM: 601527,613456) ALX homeobox protein 1 (326 aa)
initn: 355 init1: 316 opt: 356 Z-score: 291.5 bits: 61.9 E(85289): 1.7e-09
Smith-Waterman score: 356; 38.2% identity (62.3% similar) in 212 aa overlap (22-220:120-322)
10 20 30 40 50
pF1KE0 MFYFHCPPQLEGTATFGNHSSGD-FDDGFLRRKQRRNRTTFTLQQLEALEA
:: :.. :.::.::::: ::: ::
NP_008 TELNRAMDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEK
90 100 110 120 130 140
60 70 80 90 100 110
pF1KE0 VFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVT
:: .::::::..::.::.. .::::::::::::::::::: :: .. :. :: .:
NP_008 VFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQ--AKSHFAA--
150 160 170 180 190 200
120 130 140 150 160
pF1KE0 PPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFP----SCL-PGTLL--NTAT
. .:. : :. . .. : : .. : .: .. ..: ::. : . . ..
NP_008 ---TYDISVLPRTDSYPQIQNNLWAGNASGGSV-VTSCMLPRDTSSCMTPYSHSPRTDSS
210 220 230 240 250 260
170 180 190 200 210
pF1KE0 YAQALSHVASLKGGPLCSCCVPDPM-----GLSFLPTYGCQSNRTASVATLRMKAREHSE
:. .: ... :: . . . . : .: : :..:.:.:::::.::.
NP_008 YTGFSNHQNQFSHVPLNNFFTDSLLTGATNGHAF-ETKPEFERRSSSIAVLRMKAKEHTA
270 280 290 300 310 320
220 230 240 250 260
pF1KE0 AVLQSANLLPSTSSSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV
.
NP_008 NISWAM
>>NP_005160 (OMIM: 602078,602753) paired mesoderm homeob (284 aa)
initn: 402 init1: 343 opt: 348 Z-score: 286.1 bits: 60.7 E(85289): 3.4e-09
Smith-Waterman score: 363; 49.0% identity (61.9% similar) in 147 aa overlap (30-158:87-231)
10 20 30 40 50
pF1KE0 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPD
.::::: ::::: ::. :: :::.:::::
NP_005 CALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPD
60 70 80 90 100 110
60 70 80 90 100 110
pF1KE0 VFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQ----EPGAKEPMAEVT-----
..::::::.::.::::::::::::::::.:: ::.:: . :::. :. .
NP_005 IYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDD
120 130 140 150 160 170
120 130 140 150 160
pF1KE0 -------PPPVRNINSPPPGDQ--ARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNT
: : . . ::: : . .:: :: :: :. : :.:
NP_005 SKESTCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGP-GPG-PQPLKGALWAG
180 190 200 210 220 230
170 180 190 200 210 220
pF1KE0 ATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVL
NP_005 VAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF
240 250 260 270 280
>>NP_001128726 (OMIM: 167410,268220) paired box protein (505 aa)
initn: 396 init1: 318 opt: 352 Z-score: 285.9 bits: 61.5 E(85289): 3.5e-09
Smith-Waterman score: 352; 45.8% identity (67.6% similar) in 142 aa overlap (29-169:213-350)
10 20 30 40 50
pF1KE0 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYP
:.:::::.::::: .::: :: .: .::::
NP_001 KAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP
190 200 210 220 230 240
60 70 80 90 100 110
pF1KE0 DVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNIN
:..::::::.. .::::::::::.::::.::: . :: .: . .. . :: ..
NP_001 DIYTREELAQRTKLTEARVQVWFSNRRARWRK-QAGA-NQLAAFNHLLPGGFPPT--GMP
250 260 270 280 290
120 130 140 150 160 170
pF1KE0 SPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCL-PGTLLNTATYAQALSHVASLKGG
. :: . : . .:. : :: :. :: . : : .:. :.. :
NP_001 TLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSF
300 310 320 330 340 350
180 190 200 210 220 230
pF1KE0 PLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPV
NP_001 SSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGNPSAVPPQPQADFSISPLHGGLDSATS
360 370 380 390 400 410
>>NP_039236 (OMIM: 167410,268220) paired box protein Pax (518 aa)
initn: 374 init1: 318 opt: 352 Z-score: 285.8 bits: 61.5 E(85289): 3.5e-09
Smith-Waterman score: 352; 45.8% identity (67.6% similar) in 142 aa overlap (29-169:211-348)
10 20 30 40 50
pF1KE0 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYP
:.:::::.::::: .::: :: .: .::::
NP_039 KAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP
190 200 210 220 230 240
60 70 80 90 100 110
pF1KE0 DVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNIN
:..::::::.. .::::::::::.::::.::: . :: .: . .. . :: ..
NP_039 DIYTREELAQRTKLTEARVQVWFSNRRARWRK-QAGA-NQLAAFNHLLPGGFPPT--GMP
250 260 270 280 290
120 130 140 150 160 170
pF1KE0 SPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCL-PGTLLNTATYAQALSHVASLKGG
. :: . : . .:. : :: :. :: . : : .:. :.. :
NP_039 TLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSF
300 310 320 330 340 350
180 190 200 210 220 230
pF1KE0 PLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPV
NP_039 SSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGNPSAVPPQPQADFSISPLHGGLDSATS
360 370 380 390 400 410
263 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:17:00 2016 done: Sat Nov 5 04:17:01 2016
Total Scan time: 8.620 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]