FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4040, 263 aa 1>>>pF1KE4040 263 - 263 aa - 263 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.3597+/-0.000857; mu= 4.9606+/- 0.052 mean_var=242.9137+/-49.641, 0's: 0 Z-trim(116.3): 35 B-trim: 162 in 1/50 Lambda= 0.082290 statistics sampled from 16899 (16933) to 16899 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.52), width: 16 Scan time: 2.540 The best scores are: opt bits E(32554) CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 ( 263) 1793 224.6 5.5e-59 CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 ( 234) 1090 141.1 6.8e-34 CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 ( 220) 987 128.8 3.1e-30 CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 ( 297) 948 124.3 9.5e-29 CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 ( 321) 948 124.4 1e-28 >>CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 (263 aa) initn: 1793 init1: 1793 opt: 1793 Z-score: 1172.4 bits: 224.6 E(32554): 5.5e-59 Smith-Waterman score: 1793; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE4 MAELQLDPAMAGLGGGGGSGVGDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MAELQLDPAMAGLGGGGGSGVGDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 PPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 IDRDPTYFGPILNYLRHGKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENRTSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 IDRDPTYFGPILNYLRHGKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENRTSQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 GPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLISIGSSYNYGNEDQAEFLCVVSRELNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 GPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLISIGSSYNYGNEDQAEFLCVVSRELNN 190 200 210 220 230 240 250 260 pF1KE4 STNGIVIEPSEKAKILQERGSRM ::::::::::::::::::::::: CCDS32 STNGIVIEPSEKAKILQERGSRM 250 260 >>CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 (234 aa) initn: 962 init1: 925 opt: 1090 Z-score: 722.0 bits: 141.1 E(32554): 6.8e-34 Smith-Waterman score: 1090; 82.1% identity (94.9% similar) in 196 aa overlap (68-263:40-234) 40 50 60 70 80 90 pF1KE4 GPTPRGHGRPAAAVAQPLEPGPGPPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSF :....:::::::::::.:::::: :.:::: CCDS10 SPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSF 10 20 30 40 50 60 100 110 120 130 140 150 pF1KE4 LCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRHGKLIITKELAEEGVLEEAEF : ::: : ::.::::::::::::::::::::::.:::::::::.:.:.:::::::::::: CCDS10 LYRLC-QADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEF 70 80 90 100 110 120 160 170 180 190 200 210 pF1KE4 YNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLISIG :::.::..:::..::. ...::: ::::::::::::::::::::::::::::::::.::: CCDS10 YNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIG 130 140 150 160 170 180 220 230 240 250 260 pF1KE4 SSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQERGSRM ::::::::::::::::::.::.:. : . :::::::::::::::: CCDS10 SSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM 190 200 210 220 230 >>CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 (220 aa) initn: 968 init1: 794 opt: 987 Z-score: 656.3 bits: 128.8 E(32554): 3.1e-30 Smith-Waterman score: 987; 69.0% identity (86.6% similar) in 216 aa overlap (52-263:7-220) 30 40 50 60 70 pF1KE4 GDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPG-PPERAGG---GGAARWVRLN :. .: : . :: ::: :: ..::::: CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLN 10 20 30 80 90 100 110 120 130 pF1KE4 VGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRH :::: :.:::::: :: :::: ::: : ::.::.::::::::::::::::::::.::: CCDS74 VGGTVFLTTRQTLCREQKSFLSRLCQGE--ELQSDRDETGAYLIDRDPTYFGPILNFLRH 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE4 GKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEEL :::.. :..::::::::::::::. :.:..:.:..... ..: : :::::::::::::: CCDS74 GKLVLDKDMAEEGVLEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEEL 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE4 TQMVSTMSDGWKFEQLISIGSSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQ :::::::::::.::::..::::::::.:::::::::::.::... ::. : :.:.:.:: CCDS74 TQMVSTMSDGWRFEQLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKLLQ 160 170 180 190 200 210 260 pF1KE4 ERGSRM ::.:: CCDS74 ARGTRM 220 >>CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 (297 aa) initn: 951 init1: 733 opt: 948 Z-score: 629.6 bits: 124.3 E(32554): 9.5e-29 Smith-Waterman score: 948; 67.9% identity (85.8% similar) in 212 aa overlap (52-259:7-216) 30 40 50 60 70 pF1KE4 GDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPG-PPERAGG---GGAARWVRLN :. .: : . :: ::: :: ..::::: CCDS13 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLN 10 20 30 80 90 100 110 120 130 pF1KE4 VGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRH :::: :.:::::: :: :::: ::: : ::.::.::::::::::::::::::::.::: CCDS13 VGGTVFLTTRQTLCREQKSFLSRLCQGE--ELQSDRDETGAYLIDRDPTYFGPILNFLRH 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE4 GKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEEL :::.. :..::::::::::::::. :.:..:.:..... ..: : :::::::::::::: CCDS13 GKLVLDKDMAEEGVLEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEEL 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE4 TQMVSTMSDGWKFEQLISIGSSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQ :::::::::::.::::..::::::::.:::::::::::.::... ::. : :.:.: . CCDS13 TQMVSTMSDGWRFEQLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTE 160 170 180 190 200 210 260 pF1KE4 ERGSRM :. CCDS13 EQLEEQQQQEEEVEEVEVEQVQVEADAQEKGSRPHPLRPEAELAVRASPRPLARPQSCHP 220 230 240 250 260 270 >>CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 (321 aa) initn: 929 init1: 733 opt: 948 Z-score: 629.2 bits: 124.4 E(32554): 1e-28 Smith-Waterman score: 948; 67.9% identity (85.8% similar) in 212 aa overlap (52-259:7-216) 30 40 50 60 70 pF1KE4 GDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPG-PPERAGG---GGAARWVRLN :. .: : . :: ::: :: ..::::: CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLN 10 20 30 80 90 100 110 120 130 pF1KE4 VGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRH :::: :.:::::: :: :::: ::: : ::.::.::::::::::::::::::::.::: CCDS74 VGGTVFLTTRQTLCREQKSFLSRLCQGE--ELQSDRDETGAYLIDRDPTYFGPILNFLRH 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE4 GKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEEL :::.. :..::::::::::::::. :.:..:.:..... ..: : :::::::::::::: CCDS74 GKLVLDKDMAEEGVLEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEEL 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE4 TQMVSTMSDGWKFEQLISIGSSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQ :::::::::::.::::..::::::::.:::::::::::.::... ::. : :.:.: . CCDS74 TQMVSTMSDGWRFEQLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTE 160 170 180 190 200 210 260 pF1KE4 ERGSRM :. CCDS74 EQLEEQQQQEEEVEEVEVEQVQVEADAQEKAQSSQDPANLFSLPPLPPPPLPAGGSRPHP 220 230 240 250 260 270 263 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:34:52 2016 done: Sun Nov 6 01:34:52 2016 Total Scan time: 2.540 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]