Result of FASTA (omim) for
pFN21AB6760
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6760, 147 aa
1>>>pF1KB6760 147 - 147 aa - 147 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5557+/-0.00027; mu= 16.0308+/- 0.017
mean_var=59.9961+/-11.953, 0's: 0 Z-trim(120.5): 136 B-trim: 614 in 1/54
Lambda= 0.165582
statistics sampled from 35585 (35730) to 35585 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.419), width: 16
Scan time: 4.730
The best scores are: opt bits E(85289)
NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147) 987 243.0 1.3e-64
NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148) 982 241.8 3e-64
NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 980 241.3 4.1e-64
NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 980 241.3 4.1e-64
NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 980 241.3 4.1e-64
NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 980 241.3 4.1e-64
NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 980 241.3 4.1e-64
NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 980 241.3 4.1e-64
NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 980 241.3 4.1e-64
NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147) 970 238.9 2.2e-63
NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149) 949 233.9 7.1e-62
XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173) 945 233.0 1.5e-61
NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118) 805 199.5 1.3e-51
XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118) 797 197.5 5.1e-51
NP_001287724 (OMIM: 602963) ubiquitin-conjugating ( 118) 797 197.5 5.1e-51
XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110) 718 178.6 2.3e-45
NP_001191809 (OMIM: 602961) ubiquitin-conjugating ( 109) 698 173.9 6.3e-44
NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 662 165.5 4e-41
NP_001265484 (OMIM: 604151) ubiquitin-conjugating ( 207) 662 165.5 4e-41
XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207) 662 165.5 4e-41
NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 662 165.5 4e-41
NP_001265483 (OMIM: 604151) ubiquitin-conjugating ( 207) 662 165.5 4e-41
NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193) 661 165.2 4.4e-41
NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201) 661 165.2 4.6e-41
XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201) 661 165.2 4.6e-41
NP_001189405 (OMIM: 602916) ubiquitin-conjugating ( 160) 655 163.7 1e-40
NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176) 573 144.2 8.8e-35
XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189) 558 140.6 1.1e-33
XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167) 544 137.2 1e-32
NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152) 458 116.6 1.5e-26
NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152) 449 114.5 6.5e-26
NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152) 443 113.1 1.8e-25
NP_054895 (OMIM: 610538,616435) ubiquitin-conjugat ( 197) 424 108.6 5e-24
NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200) 413 106.0 3.1e-23
NP_003338 (OMIM: 603721) ubiquitin-conjugating enz ( 154) 410 105.2 4.2e-23
NP_001243284 (OMIM: 603721) ubiquitin-conjugating ( 212) 397 102.2 4.6e-22
NP_001297255 (OMIM: 610538,616435) ubiquitin-conju ( 167) 386 99.5 2.4e-21
NP_001269090 (OMIM: 300860,312180) ubiquitin-conju ( 119) 378 97.5 6.9e-21
NP_055316 (OMIM: 610309) ubiquitin-conjugating enz ( 222) 370 95.8 4.1e-20
NP_004214 (OMIM: 603890) ubiquitin/ISG15-conjugati ( 153) 368 95.2 4.4e-20
NP_001243285 (OMIM: 603721) ubiquitin-conjugating ( 122) 366 94.6 5.1e-20
NP_001104582 (OMIM: 602846) ubiquitin-conjugating ( 157) 359 93.0 2e-19
NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179) 356 92.3 3.6e-19
NP_919237 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 349 90.6 1e-18
NP_919235 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 349 90.6 1e-18
XP_016879129 (OMIM: 601661) PREDICTED: SUMO-conjug ( 158) 349 90.6 1e-18
NP_919236 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 349 90.6 1e-18
NP_003336 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 349 90.6 1e-18
NP_861517 (OMIM: 605574) ubiquitin-conjugating enz ( 140) 328 85.6 3.1e-17
NP_003960 (OMIM: 603173) NEDD8-conjugating enzyme ( 183) 322 84.2 1e-16
>>NP_003330 (OMIM: 602962) ubiquitin-conjugating enzyme (147 aa)
initn: 987 init1: 987 opt: 987 Z-score: 1281.0 bits: 243.0 E(85289): 1.3e-64
Smith-Waterman score: 987; 93.2% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
NP_003 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_003 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.:::::::.::::::::::
NP_003 PEIARIYKTDREKYNRIAREWTQKYAM
130 140
>>NP_871621 (OMIM: 602963) ubiquitin-conjugating enzyme (148 aa)
initn: 982 init1: 982 opt: 982 Z-score: 1274.5 bits: 241.8 E(85289): 3e-64
Smith-Waterman score: 982; 92.5% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.::.::::::::::.::::
NP_871 PEIARIYKTDRDKYNRLAREWTEKYAML
130 140
>>NP_871616 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 980 init1: 980 opt: 980 Z-score: 1272.0 bits: 241.3 E(85289): 4.1e-64
Smith-Waterman score: 980; 91.8% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.::.::::..:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_003331 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 980 init1: 980 opt: 980 Z-score: 1272.0 bits: 241.3 E(85289): 4.1e-64
Smith-Waterman score: 980; 91.8% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
NP_003 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_003 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.::.::::..:::::::::
NP_003 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871618 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 980 init1: 980 opt: 980 Z-score: 1272.0 bits: 241.3 E(85289): 4.1e-64
Smith-Waterman score: 980; 91.8% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.::.::::..:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871617 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 980 init1: 980 opt: 980 Z-score: 1272.0 bits: 241.3 E(85289): 4.1e-64
Smith-Waterman score: 980; 91.8% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.::.::::..:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871620 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 980 init1: 980 opt: 980 Z-score: 1272.0 bits: 241.3 E(85289): 4.1e-64
Smith-Waterman score: 980; 91.8% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.::.::::..:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871619 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 980 init1: 980 opt: 980 Z-score: 1272.0 bits: 241.3 E(85289): 4.1e-64
Smith-Waterman score: 980; 91.8% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.::.::::..:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871615 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 980 init1: 980 opt: 980 Z-score: 1272.0 bits: 241.3 E(85289): 4.1e-64
Smith-Waterman score: 980; 91.8% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.::.::::..:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_003329 (OMIM: 602961) ubiquitin-conjugating enzyme (147 aa)
initn: 970 init1: 970 opt: 970 Z-score: 1259.0 bits: 238.9 E(85289): 2.2e-63
Smith-Waterman score: 970; 91.8% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::::::.::::::::.:::::::::::::::::::: :: :::::::::.::::::
NP_003 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
:.::. ::.:.::::: ::::::::::
NP_003 PDIAQIYKSDKEKYNRHAREWTQKYAM
130 140
147 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:01:03 2016 done: Sat Nov 5 04:01:03 2016
Total Scan time: 4.730 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]