Result of FASTA (ccds) for
pFN21AB6760
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6760, 147 aa
1>>>pF1KB6760 147 - 147 aa - 147 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7113+/-0.000537; mu= 15.1093+/- 0.033
mean_var=60.6808+/-12.135, 0's: 0 Z-trim(113.4): 68 B-trim: 85 in 1/52
Lambda= 0.164645
statistics sampled from 13946 (14017) to 13946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.431), width: 16
Scan time: 1.720
The best scores are: opt bits E(32554)
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 1036 253.4 3.8e-68
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 987 241.7 1.2e-64
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 982 240.5 2.8e-64
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 980 240.1 3.8e-64
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 970 237.7 2e-63
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 949 232.7 6.4e-62
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 805 198.4 1.1e-51
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 797 196.5 3.9e-51
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 698 173.0 4.4e-44
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 662 164.6 2.7e-41
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 661 164.4 3.1e-41
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 661 164.4 3.2e-41
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 655 162.9 7.1e-41
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 573 143.4 5.6e-35
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 458 116.1 8.3e-27
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 449 113.9 3.7e-26
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 443 112.5 9.8e-26
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 424 108.1 2.7e-24
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 413 105.5 1.7e-23
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 410 104.7 2.3e-23
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 397 101.7 2.5e-22
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 378 97.0 3.6e-21
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 370 95.3 2.2e-20
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 368 94.7 2.3e-20
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 366 94.2 2.7e-20
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 359 92.6 1e-19
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 356 91.9 1.9e-19
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 349 90.2 5.3e-19
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 328 85.2 1.5e-17
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 322 83.8 5.1e-17
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 308 80.5 5.1e-16
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 303 79.3 1.1e-15
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 165) 299 78.3 2.1e-15
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 295 77.4 3.7e-15
CCDS627.1 UBE2U gene_id:148581|Hs108|chr1 ( 226) 294 77.2 6e-15
CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 285 75.0 2.2e-14
CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2 ( 185) 285 75.0 2.3e-14
CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 285 75.1 2.3e-14
CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2 ( 161) 277 73.1 7.6e-14
CCDS47044.1 UBE2K gene_id:3093|Hs108|chr4 ( 149) 263 69.7 7.2e-13
CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9 ( 238) 259 69.0 2e-12
CCDS11540.2 UBE2Z gene_id:65264|Hs108|chr17 ( 354) 254 67.9 6.2e-12
CCDS12030.1 CDC34 gene_id:997|Hs108|chr19 ( 236) 249 66.6 1e-11
CCDS14.1 UBE2J2 gene_id:118424|Hs108|chr1 ( 259) 248 66.4 1.3e-11
CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 137) 243 65.0 1.8e-11
CCDS5021.1 UBE2J1 gene_id:51465|Hs108|chr6 ( 318) 244 65.5 3e-11
CCDS63177.1 UBE2F gene_id:140739|Hs108|chr2 ( 153) 240 64.3 3.2e-11
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 1036 init1: 1036 opt: 1036 Z-score: 1336.9 bits: 253.4 E(32554): 3.8e-68
Smith-Waterman score: 1036; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
:::::::::::::::::::::::::::
CCDS54 PEIAHTYKADREKYNRLAREWTQKYAM
130 140
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 987 init1: 987 opt: 987 Z-score: 1274.0 bits: 241.7 E(32554): 1.2e-64
Smith-Waterman score: 987; 93.2% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS43 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.:::::::.::::::::::
CCDS43 PEIARIYKTDREKYNRIAREWTQKYAM
130 140
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 982 init1: 982 opt: 982 Z-score: 1267.6 bits: 240.5 E(32554): 2.8e-64
Smith-Waterman score: 982; 92.5% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS36 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.::.::::::::::.::::
CCDS36 PEIARIYKTDRDKYNRLAREWTEKYAML
130 140
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 980 init1: 980 opt: 980 Z-score: 1265.0 bits: 240.1 E(32554): 3.8e-64
Smith-Waterman score: 980; 91.8% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS36 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.::.::::..:::::::::
CCDS36 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 970 init1: 970 opt: 970 Z-score: 1252.2 bits: 237.7 E(32554): 2e-63
Smith-Waterman score: 970; 91.8% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::::::.::::::::.:::::::::::::::::::: :: :::::::::.::::::
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
:.::. ::.:.::::: ::::::::::
CCDS72 PDIAQIYKSDKEKYNRHAREWTQKYAM
130 140
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 949 init1: 949 opt: 949 Z-score: 1225.2 bits: 232.7 E(32554): 6.4e-62
Smith-Waterman score: 949; 90.3% identity (97.9% similar) in 144 aa overlap (4-147:6-149)
10 20 30 40 50
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::.:: :::::::::::::::.::::::::::::::::::::::::::::
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 DYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP
:::::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
70 80 90 100 110 120
120 130 140
pF1KB6 LVPEIAHTYKADREKYNRLAREWTQKYAM
::::::. ::.::.::::..:::::::::
CCDS36 LVPEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 (118 aa)
initn: 805 init1: 805 opt: 805 Z-score: 1041.7 bits: 198.4 E(32554): 1.1e-51
Smith-Waterman score: 805; 94.1% identity (99.2% similar) in 118 aa overlap (30-147:1-118)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
.::::::::::::::::::::::::::::::
CCDS47 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS47 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
40 50 60 70 80 90
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.:::::::.::::::::::
CCDS47 PEIARIYKTDREKYNRIAREWTQKYAM
100 110
>>CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 (118 aa)
initn: 797 init1: 797 opt: 797 Z-score: 1031.5 bits: 196.5 E(32554): 3.9e-51
Smith-Waterman score: 797; 92.4% identity (99.2% similar) in 118 aa overlap (30-147:1-118)
10 20 30 40 50 60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
.::::::::::::::::::::::::::::::
CCDS75 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30
70 80 90 100 110 120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS75 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
40 50 60 70 80 90
130 140
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
::::. ::.::.::::..:::::::::
CCDS75 PEIARIYKTDRDKYNRISREWTQKYAM
100 110
>>CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 (109 aa)
initn: 695 init1: 695 opt: 698 Z-score: 904.8 bits: 173.0 E(32554): 4.4e-44
Smith-Waterman score: 698; 90.0% identity (95.5% similar) in 110 aa overlap (38-147:1-109)
10 20 30 40 50 60
pF1KB6 KELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV
: : :: :::::::::.::::::::::::.
CCDS73 MTP-DSAYQGGVFFLTVHFPTDYPFKPPKI
10 20
70 80 90 100 110 120
pF1KB6 AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::.::. :
CCDS73 AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY
30 40 50 60 70 80
130 140
pF1KB6 KADREKYNRLAREWTQKYAM
:.:.::::: ::::::::::
CCDS73 KSDKEKYNRHAREWTQKYAM
90 100
>>CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 (207 aa)
initn: 662 init1: 662 opt: 662 Z-score: 854.8 bits: 164.6 E(32554): 2.7e-41
Smith-Waterman score: 662; 64.3% identity (84.6% similar) in 143 aa overlap (4-146:64-206)
10 20 30
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHW
:::::::... ::: .::::: ::....:
CCDS22 EQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQW
..::.:: : :.:::::: : : .:::::::::.: :.::: ::::.: ::::::...:
CCDS22 RSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
100 110 120 130 140 150
100 110 120 130 140
pF1KB6 SPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM
:::::.::::::::::: : :: :::: :: : ..: ...:.::.::..::
CCDS22 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT
160 170 180 190 200
147 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:01:02 2016 done: Sat Nov 5 04:01:02 2016
Total Scan time: 1.720 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]