(Circular) (Six-base) MAPSORT of: pFN21AE0822.seq Check: 9357 from: 1 to: 5401 pFN21AE0822 5401 bp With 182 enzymes: SgfI * October 20, 2009 10:51 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2551 3211 278 Size: 53 83 186 936 1015 660 2468 Fragments arranged by size: 2468 1015 936 660 186 83 53 AccI GT'mk_AC Cuts at: 1937 2744 1937 Size: 807 4594 Acc65I G'GTAC_C Cuts at: 2722 2722 Size: 5401 AclI AA'CG_TT Cuts at: 1563 3528 3901 1563 Size: 1965 373 3063 Fragments arranged by size: 3063 1965 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3464 4848 5116 1632 Size: 1832 1384 268 1917 Fragments arranged by size: 1917 1832 1384 268 AflII C'TTAA_G Cuts at: 820 1017 2245 820 Size: 197 1228 3976 Fragments arranged by size: 3976 1228 197 AflIII A'CryG_T Cuts at: 1203 2337 2418 2483 4300 5277 1203 Size: 1134 81 65 1817 977 1327 Fragments arranged by size: 1817 1327 1134 977 81 65 AgeI A'CCGG_T Cuts at: 4232 4232 Size: 5401 AhdI GACnn_n'nnGTC Cuts at: 4130 4130 Size: 5401 AleI CACnn'nnGTG Cuts at: 1166 2603 1166 Size: 1437 3964 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2116 1184 Size: 932 4469 AlwNI CAG_nnn'CTG Cuts at: 3144 4716 3144 Size: 1572 3829 ApaLI G'TGCA_C Cuts at: 3458 4614 3458 Size: 1156 4245 ApoI r'AATT_y Cuts at: 1493 2014 2710 2936 3088 5197 1493 Size: 521 696 226 152 2109 1697 Fragments arranged by size: 2109 1697 696 521 226 152 AseI AT'TA_AT Cuts at: 160 1032 3955 160 Size: 872 2923 1606 Fragments arranged by size: 2923 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5401 AvaI C'yCGr_G Cuts at: 1870 1943 2726 1870 Size: 73 783 4545 Fragments arranged by size: 4545 783 73 BamHI G'GATC_C Cuts at: 2731 3098 2731 Size: 367 5034 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2722 4177 618 Size: 325 217 627 935 1455 1842 Fragments arranged by size: 1842 1455 935 627 325 217 BanII G_rGCy'C Cuts at: 1391 2720 1391 Size: 1329 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2039 928 Size: 971 140 4290 Fragments arranged by size: 4290 971 140 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3592 3626 1903 Size: 34 50 34 1571 34 3678 Fragments arranged by size: 3678 1571 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3293 4503 3293 Size: 1210 4191 BclI T'GATC_A Cuts at: 1548 2400 1548 Size: 852 4549 BfrBI ATG'CAT Cuts at: 2539 2539 Size: 5401 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4012 136 Size: 107 122 71 631 605 2340 1525 Fragments arranged by size: 2340 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5396 5396 Size: 5401 BlpI GC'TnA_GC Cuts at: 2818 2818 Size: 5401 Bme1580I G_kGCm'C Cuts at: 1790 3462 4618 1790 Size: 1672 1156 2573 Fragments arranged by size: 2573 1672 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5401 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3132 4090 442 Size: 416 53 83 399 24 1715 958 1753 Fragments arranged by size: 1753 1715 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5401 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4061 1239 Size: 2822 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3526 4391 4689 3526 Size: 865 298 4238 Fragments arranged by size: 4238 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4064 882 Size: 617 2565 2219 Fragments arranged by size: 2565 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2340 3192 493 Size: 711 1136 852 2702 Fragments arranged by size: 2702 1136 852 711 BsaBI GATnn'nnATC Cuts at: 5395 5395 Size: 5401 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2548 3208 3590 4225 Size: 53 83 186 936 1015 660 382 635 Cuts at: 4225 275 Size: 1451 Fragments arranged by size: 1451 1015 936 660 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3834 4232 4506 4653 5064 3834 Size: 398 274 147 411 4171 Fragments arranged by size: 4171 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2246 2276 1178 Size: 30 165 30 843 30 4303 Fragments arranged by size: 4303 843 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2301 1186 Size: 1115 4286 BseYI C'CCAG_C Cuts at: 4604 5100 4604 Size: 496 4905 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4828 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2851 3612 4640 1540 Size: 275 186 850 761 1028 2301 Fragments arranged by size: 2301 1028 850 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2100 3462 3547 4618 2100 Size: 1362 85 1071 2883 Fragments arranged by size: 2883 1362 1071 85 BsmI GAATG_Cn' Cuts at: 2912 3005 2912 Size: 93 5308 BsmBI CGTCTCn'nnnn_ Cuts at: 2539 2539 Size: 5401 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2100 2720 3462 3547 4618 1391 Size: 399 310 620 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 620 399 310 85 BspEI T'CCGG_A Cuts at: 5064 5064 Size: 5401 BspHI T'CATG_A Cuts at: 3290 5020 3290 Size: 1730 3671 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2039 2756 844 Size: 1195 717 3489 Fragments arranged by size: 3489 1195 717 BsrBI CCG'CTC Cuts at: 1394 1823 3288 1394 Size: 429 1465 3507 Fragments arranged by size: 3507 1465 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2076 2150 3896 4070 65 Size: 1183 828 74 1746 174 1396 Fragments arranged by size: 1746 1396 1183 828 174 74 BsrFI r'CCGG_y Cuts at: 1700 1810 2372 4045 4232 1700 Size: 110 562 1673 187 2869 Fragments arranged by size: 2869 1673 562 187 110 BsrGI T'GTAC_A Cuts at: 96 2361 96 Size: 2265 3136 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5401 BssSI C'ACGA_G Cuts at: 3461 4473 3461 Size: 1012 4389 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5401 BstBI TT'CG_AA Cuts at: 4205 4205 Size: 5401 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5401 BstYI r'GATC_y Cuts at: 1972 2731 3098 3483 3500 4952 5038 5050 5396 Size: 759 367 385 17 1452 86 12 346 Cuts at: 5396 1972 Size: 1977 Fragments arranged by size: 1977 1452 759 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2639 2639 Size: 5401 BtgI C'CryG_G Cuts at: 513 1065 2565 513 Size: 552 1500 3349 Fragments arranged by size: 3349 1500 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4662 Fragments arranged by size: 4662 683 56 BtsI GCAGTG_nn' Cuts at: 2069 2098 2917 3711 3731 2069 Size: 29 819 794 20 3739 Fragments arranged by size: 3739 819 794 29 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5401 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5366 DraI TTT'AAA Cuts at: 2705 2705 Size: 5401 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4408 809 Size: 507 3092 1802 Fragments arranged by size: 3092 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2136 2848 3737 Size: 54 1425 50 275 18 306 712 889 Cuts at: 3737 5366 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 712 306 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2848 1537 Size: 275 1036 4090 Fragments arranged by size: 4090 1036 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2400 2534 3331 1353 Size: 1047 134 797 3423 Fragments arranged by size: 3423 1047 797 134 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3988 4362 4508 387 Size: 1064 138 2399 374 146 1280 Fragments arranged by size: 2399 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3464 4061 4848 5116 1239 Size: 393 1832 597 787 268 1524 Fragments arranged by size: 1832 1524 787 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2250 2250 Size: 5401 EcoRI G'AATT_C Cuts at: 2710 3088 2710 Size: 378 5023 FspI TGC'GCA Cuts at: 3907 3907 Size: 5401 HaeII r_GCGC'y Cuts at: 1678 4548 1678 Size: 2870 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4042 4074 4116 4148 1373 Size: 32 135 32 2470 32 42 32 2626 Fragments arranged by size: 2626 2470 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2745 2991 669 Size: 988 281 807 246 3079 Fragments arranged by size: 3079 988 807 281 246 HindIII A'AGCT_T Cuts at: 748 2472 748 Size: 1724 3677 HpaI GTT'AAC Cuts at: 2991 2991 Size: 5401 KpnI G_GTAC'C Cuts at: 2726 2726 Size: 5401 MfeI C'AATT_G Cuts at: 3000 3000 Size: 5401 MluI A'CGCG_T Cuts at: 5277 5277 Size: 5401 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4515 4699 1305 Size: 3210 184 2007 Fragments arranged by size: 3210 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2138 10 Size: 54 1425 343 306 3273 Fragments arranged by size: 3273 1425 343 306 54 MslI CAynn'nnrTG Cuts at: 518 1166 2081 2603 3359 3718 3877 518 Size: 648 915 522 756 359 159 2042 Fragments arranged by size: 2042 915 756 648 522 359 159 MspA1I CmG'CkG Cuts at: 1606 2817 3494 4642 4887 1606 Size: 1211 677 1148 245 2120 Fragments arranged by size: 2120 1211 1148 677 245 NaeI GCC'GGC Cuts at: 2374 2374 Size: 5401 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4849 NdeI CA'TA_TG Cuts at: 387 2122 387 Size: 1735 3666 NgoMIV G'CCGG_C Cuts at: 2372 2372 Size: 5401 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5401 NotI GC'GGCC_GC Cuts at: 2848 2848 Size: 5401 NsiI A_TGCA'T Cuts at: 2541 2541 Size: 5401 NspI r_CATG'y Cuts at: 1132 1229 2107 2331 2422 2487 2539 2759 4304 Size: 97 878 224 91 65 52 220 1545 Cuts at: 4304 1132 Size: 2229 Fragments arranged by size: 2229 1545 878 224 220 97 91 65 52 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5401 PciI A'CATG_T Cuts at: 2418 2483 4300 2418 Size: 65 1817 3519 Fragments arranged by size: 3519 1817 65 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5401 PmeI GTTT'AAAC Cuts at: 2705 2705 Size: 5401 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3470 3502 4983 5015 3470 Size: 32 1481 32 3856 Fragments arranged by size: 3856 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2250 2250 Size: 5401 PshAI GACnn'nnGTC Cuts at: 1613 2504 1613 Size: 891 4510 PsiI TTA'TAA Cuts at: 2971 2971 Size: 5401 PstI C_TGCA'G Cuts at: 830 2458 2753 830 Size: 1628 295 3478 Fragments arranged by size: 3478 1628 295 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5401 SalI G'TCGA_C Cuts at: 1936 2743 1936 Size: 807 4594 SbfI CC_TGCA'GG Cuts at: 2753 2753 Size: 5401 ScaI AGT'ACT Cuts at: 3649 5361 3649 Size: 1712 3689 SexAI A'CCwGG_T Cuts at: 2193 2193 Size: 5401 SfcI C'TryA_G Cuts at: 826 1045 2158 2377 2454 2749 3884 4565 4756 Size: 219 1113 219 77 295 1135 681 191 Cuts at: 4756 826 Size: 1471 Fragments arranged by size: 1471 1135 1113 681 295 219 219 191 77 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5401 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5401 SmaI CCC'GGG Cuts at: 1872 2728 1872 Size: 856 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2245 3505 4406 4668 820 Size: 197 926 302 1260 901 262 1553 Fragments arranged by size: 1553 1260 926 901 302 262 197 SnaBI TAC'GTA Cuts at: 493 3192 493 Size: 2699 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5401 SphI G_CATG'C Cuts at: 1132 2331 2539 2759 1132 Size: 1199 208 220 3774 Fragments arranged by size: 3774 1199 220 208 SspI AAT'ATT Cuts at: 5 52 3325 5 Size: 47 3273 2081 Fragments arranged by size: 3273 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5401 StyI C'CwwG_G Cuts at: 513 1065 2176 2840 513 Size: 552 1111 664 3074 Fragments arranged by size: 3074 1111 664 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3428 3445 3598 3783 4228 325 Size: 1255 1848 17 153 185 445 1498 Fragments arranged by size: 1848 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2361 3647 5359 Size: 274 80 33 51 1443 384 1286 1712 Cuts at: 5359 96 Size: 138 Fragments arranged by size: 1712 1443 1286 384 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5361 5393 5361 Size: 32 5369 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5401 XbaI T'CTAG_A Cuts at: 2737 2737 Size: 5401 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5401 XmaI C'CCGG_G Cuts at: 1870 2726 1870 Size: 856 4545 XmnI GAAnn'nnTTC Cuts at: 2449 3530 2449 Size: 1081 4320 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2549 3209 276 Size: 53 83 186 936 1015 660 2468 Fragments arranged by size: 2468 1015 936 660 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NsiI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BplI Bpu10I BsiWI BstXI BstZ17I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NarI NruI PacI PfoI PmlI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SfiI SfoI SrfI SwaI XcmI