(Circular) (Six-base) MAPSORT of: pFN21AE0759.seq Check: 2560 from: 1 to: 5698 pFN21AE0759 5698 bp With 182 enzymes: SgfI * October 20, 2009 10:51 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3508 278 Size: 53 83 186 936 1972 2468 Fragments arranged by size: 2468 1972 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3041 1937 Size: 1104 4594 Acc65I G'GTAC_C Cuts at: 3019 3019 Size: 5698 AclI AA'CG_TT Cuts at: 1563 3825 4198 1563 Size: 2262 373 3063 Fragments arranged by size: 3063 2262 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2729 3761 5145 5413 1632 Size: 1097 1032 1384 268 1917 Fragments arranged by size: 1917 1384 1097 1032 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5501 AflIII A'CryG_T Cuts at: 1203 2424 4597 5574 1203 Size: 1221 2173 977 1327 Fragments arranged by size: 2173 1327 1221 977 AgeI A'CCGG_T Cuts at: 4529 4529 Size: 5698 AhdI GACnn_n'nnGTC Cuts at: 4427 4427 Size: 5698 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5698 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5698 AlwNI CAG_nnn'CTG Cuts at: 3441 5013 3441 Size: 1572 4126 ApaLI G'TGCA_C Cuts at: 2892 3755 4911 2892 Size: 863 1156 3679 Fragments arranged by size: 3679 1156 863 ApoI r'AATT_y Cuts at: 1493 2135 3007 3233 3385 5494 1493 Size: 642 872 226 152 2109 1697 Fragments arranged by size: 2109 1697 872 642 226 152 AseI AT'TA_AT Cuts at: 160 1032 2714 4252 160 Size: 872 1682 1538 1606 Fragments arranged by size: 1682 1606 1538 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5698 AvaI C'yCGr_G Cuts at: 1870 1943 2220 3023 1870 Size: 73 277 803 4545 Fragments arranged by size: 4545 803 277 73 BamHI G'GATC_C Cuts at: 3028 3395 3028 Size: 367 5331 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3019 4474 618 Size: 325 217 627 1232 1455 1842 Fragments arranged by size: 1842 1455 1232 627 325 217 BanII G_rGCy'C Cuts at: 1391 2376 3017 1391 Size: 985 641 4072 Fragments arranged by size: 4072 985 641 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2279 928 Size: 971 380 4347 Fragments arranged by size: 4347 971 380 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3889 3923 1903 Size: 34 1952 34 3678 Fragments arranged by size: 3678 1952 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3590 4800 3590 Size: 1210 4488 BclI T'GATC_A Cuts at: 1548 1548 Size: 5698 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4309 136 Size: 107 122 71 631 605 2637 1525 Fragments arranged by size: 2637 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5693 5693 Size: 5698 BlpI GC'TnA_GC Cuts at: 2697 3115 2697 Size: 418 5280 Bme1580I G_kGCm'C Cuts at: 1790 2896 3759 4915 1790 Size: 1106 863 1156 2573 Fragments arranged by size: 2573 1156 1106 863 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5698 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3429 4387 442 Size: 416 53 83 399 24 2012 958 1753 Fragments arranged by size: 2012 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5698 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2318 2968 4358 1239 Size: 1079 650 1390 2579 Fragments arranged by size: 2579 1390 1079 650 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3823 4688 4986 3823 Size: 865 298 4535 Fragments arranged by size: 4535 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4361 882 Size: 617 2862 2219 Fragments arranged by size: 2862 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2044 3489 493 Size: 711 840 1445 2702 Fragments arranged by size: 2702 1445 840 711 BsaBI GATnn'nnATC Cuts at: 5692 5692 Size: 5698 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3505 3887 4522 275 Size: 53 83 186 936 1972 382 635 1451 Fragments arranged by size: 1972 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4131 4529 4803 4950 5361 4131 Size: 398 274 147 411 4468 Fragments arranged by size: 4468 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2551 2581 1178 Size: 30 165 30 1148 30 4295 Fragments arranged by size: 4295 1148 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2321 2572 1186 Size: 1135 251 4312 Fragments arranged by size: 4312 1135 251 BseYI C'CCAG_C Cuts at: 2906 2937 4901 5397 2906 Size: 31 1964 496 3207 Fragments arranged by size: 3207 1964 496 31 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2174 2417 1163 Size: 573 438 243 4444 Fragments arranged by size: 4444 573 438 243 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2569 3148 3909 4937 1540 Size: 275 186 568 579 761 1028 2301 Fragments arranged by size: 2301 1028 761 579 568 275 186 BsiHKAI G_wGCw'C Cuts at: 2896 3759 3844 4915 2896 Size: 863 85 1071 3679 Fragments arranged by size: 3679 1071 863 85 BsmI GAATG_Cn' Cuts at: 2471 3209 3302 2471 Size: 738 93 4867 Fragments arranged by size: 4867 738 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2376 2896 3017 3759 3844 4915 1391 Size: 399 586 520 121 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 586 520 399 121 85 BspEI T'CCGG_A Cuts at: 5361 5361 Size: 5698 BspHI T'CATG_A Cuts at: 2485 3587 5317 2485 Size: 1102 1730 2866 Fragments arranged by size: 2866 1730 1102 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3053 844 Size: 2209 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3585 1394 Size: 429 1762 3507 Fragments arranged by size: 3507 1762 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4193 4367 65 Size: 1183 2945 174 1396 Fragments arranged by size: 2945 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4342 4529 1700 Size: 110 2532 187 2869 Fragments arranged by size: 2869 2532 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5698 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5698 BssSI C'ACGA_G Cuts at: 2889 3758 4770 2889 Size: 869 1012 3817 Fragments arranged by size: 3817 1012 869 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5698 BstBI TT'CG_AA Cuts at: 4502 4502 Size: 5698 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5698 BstYI r'GATC_y Cuts at: 1972 3028 3395 3780 3797 5249 5335 5347 5693 Size: 1056 367 385 17 1452 86 12 346 Cuts at: 5693 1972 Size: 1977 Fragments arranged by size: 1977 1452 1056 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 4207 Fragments arranged by size: 4207 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4959 Fragments arranged by size: 4959 683 56 BtsI GCAGTG_nn' Cuts at: 3214 4008 4028 3214 Size: 794 20 4884 Fragments arranged by size: 4884 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5698 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5663 DraI TTT'AAA Cuts at: 3002 3002 Size: 5698 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4705 809 Size: 507 3389 1802 Fragments arranged by size: 3389 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2385 2688 3145 Size: 54 1425 50 275 18 555 303 457 Cuts at: 3145 4034 5663 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 555 457 303 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3145 1537 Size: 275 1333 4090 Fragments arranged by size: 4090 1333 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2796 2925 3628 1353 Size: 1443 129 703 3423 Fragments arranged by size: 3423 1443 703 129 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4285 4659 4805 387 Size: 1064 138 2696 374 146 1280 Fragments arranged by size: 2696 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2318 2729 2968 3761 4358 5145 5413 Size: 393 686 411 239 793 597 787 268 Cuts at: 5413 1239 Size: 1524 Fragments arranged by size: 1524 793 787 686 597 411 393 268 239 EcoO109I rG'GnC_Cy Cuts at: 2117 2117 Size: 5698 EcoRI G'AATT_C Cuts at: 3007 3385 3007 Size: 378 5320 EcoRV GAT'ATC Cuts at: 2509 2509 Size: 5698 FspI TGC'GCA Cuts at: 4204 4204 Size: 5698 HaeII r_GCGC'y Cuts at: 1678 4845 1678 Size: 3167 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2252 2284 2527 2551 2559 Size: 32 135 32 680 32 243 24 8 Cuts at: 2559 2583 2643 2675 4339 4371 4413 4445 1373 Size: 24 60 32 1664 32 42 32 2626 Fragments arranged by size: 2626 1664 680 243 135 60 42 32 32 32 32 32 32 24 24 8 HincII GTy'rAC Cuts at: 669 1657 1938 3042 3288 669 Size: 988 281 1104 246 3079 Fragments arranged by size: 3079 1104 988 281 246 HindIII A'AGCT_T Cuts at: 748 2063 2752 748 Size: 1315 689 3694 Fragments arranged by size: 3694 1315 689 HpaI GTT'AAC Cuts at: 3288 3288 Size: 5698 KpnI G_GTAC'C Cuts at: 3023 3023 Size: 5698 MfeI C'AATT_G Cuts at: 3297 3297 Size: 5698 MluI A'CGCG_T Cuts at: 5574 5574 Size: 5698 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2037 4812 4996 1305 Size: 732 2775 184 2007 Fragments arranged by size: 2775 2007 732 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2690 10 Size: 54 1425 343 858 3018 Fragments arranged by size: 3018 1425 858 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3656 4015 4174 518 Size: 648 2490 359 159 2042 Fragments arranged by size: 2490 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2401 3114 3791 4939 5184 1606 Size: 795 713 677 1148 245 2120 Fragments arranged by size: 2120 1148 795 713 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4207 Fragments arranged by size: 4207 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5698 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5698 NotI GC'GGCC_GC Cuts at: 3145 3145 Size: 5698 NspI r_CATG'y Cuts at: 1132 1229 2240 3056 4601 1132 Size: 97 1011 816 1545 2229 Fragments arranged by size: 2229 1545 1011 816 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5698 PciI A'CATG_T Cuts at: 4597 4597 Size: 5698 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5698 PmeI GTTT'AAAC Cuts at: 3002 3002 Size: 5698 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3767 3799 5280 5312 3767 Size: 32 1481 32 4153 Fragments arranged by size: 4153 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2117 2117 Size: 5698 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5698 PsiI TTA'TAA Cuts at: 3268 3268 Size: 5698 PstI C_TGCA'G Cuts at: 830 3050 830 Size: 2220 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5698 SalI G'TCGA_C Cuts at: 1936 3040 1936 Size: 1104 4594 SbfI CC_TGCA'GG Cuts at: 3050 3050 Size: 5698 ScaI AGT'ACT Cuts at: 3946 5658 3946 Size: 1712 3986 SfcI C'TryA_G Cuts at: 826 1045 2848 2977 3046 4181 4862 5053 826 Size: 219 1803 129 69 1135 681 191 1471 Fragments arranged by size: 1803 1471 1135 681 219 191 129 69 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5698 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5698 SmaI CCC'GGG Cuts at: 1872 3025 1872 Size: 1153 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3802 4703 4965 820 Size: 197 926 1859 901 262 1553 Fragments arranged by size: 1859 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3489 493 Size: 2996 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5698 SphI G_CATG'C Cuts at: 1132 2240 3056 1132 Size: 1108 816 3774 Fragments arranged by size: 3774 1108 816 SspI AAT'ATT Cuts at: 5 52 3622 5 Size: 47 3570 2081 Fragments arranged by size: 3570 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5698 StyI C'CwwG_G Cuts at: 513 1065 2004 2365 2520 3137 513 Size: 552 939 361 155 617 3074 Fragments arranged by size: 3074 939 617 552 361 155 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3725 3742 3895 4080 4525 325 Size: 1255 2145 17 153 185 445 1498 Fragments arranged by size: 2145 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3944 5656 96 Size: 274 80 33 51 1443 1967 1712 138 Fragments arranged by size: 1967 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2564 2596 5658 5690 2564 Size: 32 3062 32 2572 Fragments arranged by size: 3062 2572 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 2027 1316 Size: 711 4987 XbaI T'CTAG_A Cuts at: 3034 3034 Size: 5698 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2527 2527 Size: 5698 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5698 XmaI C'CCGG_G Cuts at: 1870 3023 1870 Size: 1153 4545 XmnI GAAnn'nnTTC Cuts at: 2136 3827 2136 Size: 1691 4007 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3506 276 Size: 53 83 186 936 1972 2468 Fragments arranged by size: 2468 1972 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI EcoRV FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI